bioRxiv/medRxiv TRiP Review Activity

438 Reviews — All Partners — Genomics

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Non-allelic homologous recombination driven translocation explains histidine-rich protein 3 deletion mechanism in Plasmodium falciparum
Hathaway, N. J., Kim, I. E., Young, N. W., Hui, S. T., DeFeo, R., Giesbrecht, D., Liang, E. Y., Nixon, C. P., Juliano, J. J., Parr, J. B., Bailey, J. A.
10.1101/2022.12.07.519189 — Posted: 2022-12-08 — Discussion: 2024-09-17  eLife
Genome-wide mapping of native co-localized G4s and R-loops in living cells
Liu, T., Shen, X., Ren, Y., Lu, H., Liu, Y., Chen, C., Yu, L., Xue, Z.
10.1101/2024.06.03.597194 — Posted: 2024-06-04 — Discussion: 2024-09-16  eLife
Regulatory genome annotation of 33 insect species
Asma, H., Tieke, E., Deem, K. D., Rahmat, J., Dong, T., Huang, X., Tomoyasu, Y., Halfon, M. S.
10.1101/2024.01.23.576926 — Posted: 2024-01-25 — Discussion: 2024-09-16  eLife
Essentiality and dynamic expression of the human tRNA pool during viral infection
Aharon-Hefetz, N., Schwartz, M., Dahan, O., Stern-Ginossar, N., Pilpel, Y.
10.1101/2024.04.25.591047 — Posted: 2024-04-30 — Discussion: 2024-09-05  Review Commons
Identification of novel myelodysplastic syndromes prognostic subgroups by integration of inflammation, cell-type composition, and immune signatures in the bone marrow
Gerlevik, S., Hama, S., Seymen, N., Mumtaz, W., Thompson, I. R., Jalili, S. R., Kaya, D. E., Iacoangeli, A., Pellagatti, A., Boultwood, J., Napolitani, G., Mufti, G. J., Karimi, M. M.
10.1101/2024.03.11.584361 — Posted: 2024-03-13 — Discussion: 2024-08-20  eLife
A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets
Pipes, L., Nielsen, R.
10.1101/2022.12.06.519402 — Posted: 2022-12-07 — Discussion: 2024-08-15  eLife
A Comprehensive Resource for Exploring Antiphage Defense: DefenseFinder Webservice, Wiki and Databases.
Tesson, F., Planel, R., Egorov, A. A., Georjon, H., Vaysset, H., Brancotte, B., Neron, B., Mordret, E., Atkinson, G. C., Bernheim, A., Cury, J.
10.1101/2024.01.25.577194 — Posted: 2024-01-26 — Discussion: 2024-08-12  Peer Community In
From sequence to molecules: Feature sequence-based genome mining uncovers the hidden diversity of bacterial siderophore pathways
Gu, S., Shao, Y., Rehm, K., Bigler, L., Zhang, D., He, R., Shao, J., Jousset, A., Friman, V.-P., Wei, Z., Kummerli, R., Li, Z.
10.1101/2023.10.30.564663 — Posted: 2023-11-01 — Discussion: 2024-08-12  eLife
Chromosomal-level genome assembly and single-nucleotide polymorphism sites of black-faced spoonbill Platalea minor
Hong Kong Biodiversity Genomics Consortium, , Hui, J. H. L., Chan, T.-F., Chan, L., Cheung, S. G., Cheang, C. C., Fang, J., Gaitan-Espitia, J. D., Lau, S., Sung, Y. H., Wong, C., Yip, K., Wei, Y., So, W. L., Nong, W., law, s., Rose-Jeffreys, L., Crow, P., Leong, A., Yip, H.
10.1101/2024.04.08.588650 — Posted: 2024-04-11 — Discussion: 2024-08-10  Gigabyte
Kinship analysis and pedigree reconstruction by RAD sequencing in cattle
Xu, Y., Wang, W., Xu, M., Wang, B., Huang, J., Wu, Y., Xie, Y., Jian, J.
10.1101/2024.05.20.595066 — Posted: 2024-05-22 — Discussion: 2024-08-10  Gigabyte

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