Channel:  4D Nucleome

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

451 Articles

An Integrative Framework For Detecting Structural Variations In Cancer Genomes
Dixon, J., Xu, J., Dileep, V., Zhan, Y., Song, F., Le, V. T., Yardimci, G. G., Chakraborty, A., Bann, D. V., Wang, Y., Clark, R., Zhang, L., Yang, H., Liu, T., Iyyanki, S., An, L., Pool, C., Sasaki, T., Mulia, J. C. R., Ozadam, H., Lajoie, B. R., Kaul, R., Buckley, M., Lee, K., Diegel, M., Pezic, D., Ernst, C., Hadjur, S., Odom, D. T., Stamatoyannopoulos, J. A., Broach, J. R., Hardison, R., Ay, F., Noble, W. S., Dekker, J., Gilbert, D. M., Yue, F.
10.1101/119651 — Posted: 2017-03-28
Preservation of Chromatin Organization after Acute Loss of CTCF in Mouse Embryonic Stem Cells
Kubo, N., Ishii, H., Gorkin, D., Meitinger, F., Xiong, X., Fang, R., Liu, T., Ye, Z., Li, B., Dixon, J., Desai, A., Zhao, H., Ren, B.
10.1101/118737 — Posted: 2017-03-20
HUGIn: Hi-C Unifying Genomic Interrogator
Martin, J. S., Xu, Z., Reiner, A. P., Mohlke, K. L., Sullivan, P., Ren, B., Hu, M., Li, Y.
10.1101/117531 — Posted: 2017-03-16
Free energy based high-resolution modeling of CTCF-mediated chromatin loops for human genome
Dawson, W., Plewczynski, D.
10.1101/105676 — Posted: 2017-03-08
HiCPlus: Resolution Enhancement of Hi-C interaction heatmap
Zhang, Y., An, L., Hu, M., Tang, J., Yue, F.
10.1101/112631 — Posted: 2017-03-01
Repli-seq: genome-wide analysis of replication timing by next-generation sequencing
Marchal, C., Sasaki, T., Vera, D., Wilson, K., Sima, J., Rivera-Mulia, J.-C., Trevilla Garcia, C., Nogues, C., Nafie, E., Gilbert, D. M.
10.1101/104653 — Posted: 2017-03-01
A fluorogenic nanobody array tag for prolonged single molecule imaging in live cells
Ghosh, R., Draper, W., Franklin, J. M., Shi, Q., Liphardt, J.
10.1101/111690 — Posted: 2017-02-27
The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions
Wang, Y., Zhang, B., Zhang, L., An, L., Xu, J., Li, D., Choudhary, M. N., Li, Y., Hu, M., Hardison, R., Wang, T., Yue, F.
10.1101/112268 — Posted: 2017-02-27
p53 dynamically directs TFIID assembly on target gene promoters
Coleman, R. A., Qiao, Z., Singh, S. K., Peng, C. S., Cianfrocco, M., Zhang, Z., Piasecka, A., Aldeborgh, H., Basishvili, G., Liu, W.-L.
10.1101/083014 — Posted: 2017-02-24
Real-time chromatin dynamics at the single gene levelduring transcription activation
Germier, T., Kocanova, S., Walther, N., Bancaud, A., Shaban, H. A., Sellou, H., Politi, A., Ellenberg, J., Gallardo, F., Bystricky, K.
10.1101/111179 — Posted: 2017-02-23

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