Channel:  4D Nucleome

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

467 Articles

Impact of chromatin context on Cas9-induced DNA double-strand break repair pathway balance
Schep, R., Brinkman, E. K., Leemans, C., Vergara, X., Morris, B., van Schaik, T., Manzo, S. G., Peric Hupkes, D., van den Berg, J., Beijersbergen, R., Medema, R. H., van Steensel, B.
10.1101/2020.05.05.078436 — Posted: 2020-05-05
The qBED track: a novel genome browser visualization for point processes
Moudgil, A., Li, D., Hsu, S., Purushotham, D., Wang, T., Mitra, R. D.
10.1101/2020.04.27.060061 — Posted: 2020-04-30
HiTea: a computational pipeline to identify non-reference transposable element insertions in Hi-C data
Jain, D., Chu, C., Alver, B. H., Lee, S., Lee, E. A., Park, P. J.
10.1101/2020.04.27.060145 — Posted: 2020-04-28
Comparison of the Hi-C, GAM and SPRITE methods by use of polymer models of chromatin
Fiorillo, L., Musella, F., Kempfer, R., Chiariello, A. M., Bianco, S., Kukalev, A., Irastorza-Azcarate, I., Esposito, A., Conte, M., Prisco, A., Pombo, A., Nicodemi, M.
10.1101/2020.04.24.059915 — Posted: 2020-04-25
Single-molecule diffusometry reveals no catalysis-induced diffusion enhancement of alkaline phosphatase as proposed by FCS experiments
Chen, Z., Shaw, A., Wilson, H., Woringer, M., Darzacq, X., Marqusee, S., Wang, Q., Bustamante, C.
10.1101/2020.04.10.036442 — Posted: 2020-04-11
Concerted localization resets precede YAP-dependent transcription
Ghosh, R. P., Franklin, J. M., Shi, Q., Reddick, M. P., Liphardt, J. T.
10.1101/539049 — Posted: 2020-04-05
Peax: Interactive Visual Pattern Search in Sequential Data Using Unsupervised Deep Representation Learning
Lekschas, F., Peterson, B., Haehn, D., Ma, E., Gehlenborg, N., Pfister, H.
10.1101/597518 — Posted: 2020-04-02
Chromosome organization by one-sided and two-sided loop extrusion
Banigan, E. J., van den Berg, A. A., Brandao, H. B., Marko, J. F., Mirny, L. A.
10.1101/815340 — Posted: 2020-04-02
CTCF Promotes Long-range Enhancer-promoter Interactions and Lineage-specific Gene Expression in Mammalian Cells
Kubo, N., Ishii, H., Xiong, X., Bianco, S., Meitinger, F., Hu, R., Hocker, J. D., Conte, M., Gorkin, D., Yu, M., Li, B., Dixon, J., Hu, M., Nicodemi, M., Zhao, H., Ren, B.
10.1101/2020.03.21.001693 — Posted: 2020-03-23
Accurate 4Pi single-molecule localization using an experimental PSF model
Li, Y., Buglakova, E., Zhang, Y., Thevathasan, J. V., Bewersdorf, J., Ries, J.
10.1101/2020.03.18.997163 — Posted: 2020-03-19

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