Channel:  Human Pangenome Reference Consortium (HPRC)

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

50 Articles

Co-opted transposons help perpetuate conserved higher-order chromosomal structures
Choudhary, M. N., Friedman, R. Z., Wang, J. T., Jang, H. S., Zhuo, X., Wang, T.
10.1101/485342 — Posted: 2019-10-14
Exploring the coronavirus epidemic using the new WashU Virus Genome Browser
Flynn, J., Purushotham, D., Choudhary, M. N., Zhuo, X., Fan, C., Matt, G., Li, D., Wang, T.
10.1101/2020.02.07.939124 — Posted: 2020-02-11
SDip: A novel graph-based approach to haplotype-aware assembly based structural variant calling in targeted segmental duplications sequencing
Heller, D., Vingron, M., Church, G., Li, H., Garg, S.
10.1101/2020.02.25.964445 — Posted: 2020-02-26
Succinct dynamic variation graphs
Eizenga, J. M., Novak, A. M., Kobayashi, E., Villani, F., Cisar, C., Heumos, S., Hickey, G., Colonna, V., Paten, B., Garrison, E.
10.1101/2020.04.23.056317 — Posted: 2020-04-25
Higher rates of processed pseudogene acquisition in humans and three great apes revealed by long read assemblies
Feng, X., Li, H.
10.1101/2020.06.07.139212 — Posted: 2020-06-08
Accurate chromosome-scale haplotype-resolved assembly of human genomes
Garg, S., Arkarachai Fungtammasan, A., Carroll, A., Chou, M., Schmitt, A., Zhou, X., Mac, S., Peluso, P., Hatas, E., Ghurye, J., Maguire, J., Mahmoud, M., Cheng, H., Heller, D., Zook, J. M., Moemke, T., Marschall, T., Sedlazeck, F. J., Aach, J., Chin, C.-S., Church, G. M., Li, H. M.
10.1101/810341 — Posted: 2020-07-01
Transcript assembly improves expression quantification of transposable elements in single cell RNA-seq data
Shao, W., Wang, T.
10.1101/2020.07.31.231027 — Posted: 2020-07-31
The structure, function, and evolution of a complete human chromosome 8
Logsdon, G. A., Vollger, M. R., Hsieh, P., Mao, Y., Liskovykh, M. A., Koren, S., Nurk, S., Mercuri, L., Dishuck, P. C., Rhie, A., de Lima, L. G., Porubsky, D., Bzikadze, A. V., Kremitzki, M., Graves-Lindsay, T. A., Jain, C., Hoekzema, K., Murali, S. C., Munson, K. M., Baker, C., Sorenson, M., Lewis, A. M., Surti, U., Gerton, J. L., Larionov, V., Ventura, M., Miga, K. H., Phillippy, A. M., Eichler, E. E.
10.1101/2020.09.08.285395 — Posted: 2020-09-08
UCSC Cell Browser: Visualize Your Single-Cell Data
Speir, M. L., Bhaduri, A., Markov, N. S., Moreno, P., Nowakowski, T. J., Papatheodorou, I., Pollen, A. A., Seninge, L., Kent, W. J., Haeussler, M.
10.1101/2020.10.30.361162 — Posted: 2020-10-31
Towards Inferring Nanopore Sequencing Ionic Currents from Nucleotide Chemical Structures
DING, H., Anastopoulos, I., Bailey, A. D., Paten, B., Stuart, J.
10.1101/2020.11.30.404947 — Posted: 2020-12-02

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