Channel:  Johns Hopkins University

This collection includes bioRxiv and medRxiv papers from authors at Johns Hopkins University.

5648 Articles

Enhancing pre-defined workflows with ad hoc analytics using Galaxy, Docker and Jupyter
Björn Grüning, Eric Rasche, Boris Rebolledo Jaramillo, Carl Eberhard, Torsten Houwaart, John Chilton, Nathan Coraor, Rolf Backofen, James Taylor, Anton Nekrutenko
10.1101/075457 — Posted: 2016-09-22
Data aggregation at the level of molecular pathways improves stability of experimental transcriptomic and proteomic data
Nicolas Borisov, Maria Suntsova, Andrew Garazha, Ksenia Lezhnina, Olga Kovalchuk, Alexander Aliper, Elena Ilnitskaya, Maxim Sorokin, Mihkail Korzinkin, Vyacheslav Saenko, Yury Saenko, Dmitry G. Sokov, Nurshat M. Gaifullin, Kirill Kashintsev, Valery Shirokorad, Irina Shabalina, Alex Zhavoronkov, Bhubaneswar Mishra, Charles R. Cantor, Anton Buzdin
10.1101/076620 — Posted: 2016-09-21
Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry
Ben C Collins, Christie L Hunter, Yansheng Liu, Birgit Schilling, George Rosenberger Rosenberger, Samuel L Bader, Daniel W Chan, Bradford W Gibson, Anne-Claude Gingras, Jason M Held, Mio Hirayama-Kurogi, Guixue Hou, Christoph Krisp Krisp, Brett Larsen, Liang Lin, Siqi Liu, Mark P Molloy, Robert L Moritz, Sumio Ohtsuki, Ralph Schlapbach, Nathalie Selevsek, Stefani N Thomas, Shin-Cheng Tzeng, Hui Zhang, Ruedi Aebersold
10.1101/074567 — Posted: 2016-09-14
A framework for RNA quality correction in differential expression analysis
Andrew E Jaffe, Ran Tao, Alexis Norris, Marc Kealhofer, Abhinav Nellore, Yankai Jia, Thomas Hyde, Joel Kleinman, Richard Straub, Jeffrey T Leek, Daniel Weinberger
10.1101/074245 — Posted: 2016-09-09
Distant regulatory effects of genetic variation in multiple human tissues
Brian Jo, Yuan He, Benjamin J Strober, Princy Parsana, Francois Aguet, Andrew A Brown, Stephane E Castel, Eric R Gamazon, Ariel Gewirtz, Genna Gliner, Buhm Han, Amy Z He, Eun Yong Kang, Ian C McDowell, Xiao Li, Pejman Mohammadi, Christine B Peterson, Gerald Quon, Ashis Saha, Ayellet V Segre, Jae Hoon Sul, Timothy J Sullivan, Kristin G Ardlie, Christopher D Brown, Donald F Conrad, Nancy J Cox, Emmanouil T Dermitzakis, Eleazar Eskin, Manolis Kellis, Tuuli Lappalainen, Chiara Sabatti, GTEx Consortium, Barbara E Engelhardt, Alexis Battle
10.1101/074419 — Posted: 2016-09-09
The impact of rare variation on gene expression across tissues
Xin Li, Yungil Kim, Emily K. Tsang, Joe R. Davis, Farhan N. Damani, Colby Chiang, Zachary Zappala, Benjamin J. Strober, Alexandra J. Scott, Andrea Ganna, Jason Merker, GTEx Consortium, Ira M. Hall, Alexis Battle, Stephen B. Montgomery
10.1101/074443 — Posted: 2016-09-09
Local genetic effects on gene expression across 44 human tissues
Francois Aguet, Andrew A Brown, Stephane Castel, Joe R Davis, Pejman Mohammadi, Ayellet V Segre, Zachary Zappala, Nathan S Abell, Laure Fresard, Eric R Gamazon, Ellen Gelfand, Machael J Gloudemans, Yuan He, Farhad Hormozdiari, Xiao Li, Xin Li, Boxiang Liu, Diego Garrido-Martin, Halit Ongen, John J Palowitch, YoSon Park, Christine B Peterson, Gerald Quon, Stephan Ripke, Andrey A Shabalin, Tyler C Shimko, Benjamin J Strober, Timothy J Sullivan, Nicole A Teran, Emily K Tsang, Hailei Zhang, Yi-Hui Zhou, Alexis Battle, Carlos D Bustamonte, Nancy J Cox, Barbara E Engelhardt, Eleazar Eskin, Gad Getz, Manolis Kellis, Gen Li, Daniel G MacArt
10.1101/074450 — Posted: 2016-09-09
Spatial patterning of P granules by RNA-induced phase separation of the intrinsically-disordered protein MEG-3
Jarrett Smith, Deepika Calidas, Helen Schmidt, Tu Lu, Dominique Rasoloson, Geraldine Seydoux
10.1101/073908 — Posted: 2016-09-07
Computational Pan-Genomics: Status, Promises and Challenges
Tobias Marschall, Manja Marz, Thomas Abeel, Louis Dijkstra, Bas E Dutilh, Ali Ghaffaari, Paul Kersey, Wigard Kloosterman, Veli Makinen, Adam Novak, Benedict Paten, David Porubsky, Eric RIVALS, Can Alkan, Jasmijn Baaijens, Paul I. W. de Bakker, Valentina Boeva, Raoul J.P. Bonnal, Francesca Chiaromonte, Rayan Chikhi, Francesca D. Ciccarelli, Robin Cijvat, Erwin Datema, Cornelia M. Van Duijn, Evan E. Eichler, Corinna Ernst, Eleazar Eskin, Erik Garrison, Mohammed El-Kebir, Gunnar W. Klau, Jan O Korbel, Eric-Wubbo Lameijer, Ben Langmead, Marcel Martin, Paul Medvedev, John C. Mu, Pieter Neerincx, Klaasjan Ouwens, Pierre Peterlongo, Pisan
10.1101/043430 — Posted: 2016-08-25
Molecular signatures associated with ZIKV exposure in human cortical neural progenitors
Feiran Zhang, Christy Hammack, Sarah Ogden, Yichen Cheng, Emily Lee, Zhexing Wen, Xuyu Qian, Ha Nam Nguyen, Yujing Li, Bing Yao, Miao Xu, Tianlei Xu, Li Chen, Zhiqin Wang, Hao Feng, Wei-Kai Huang, Ki-jun Yoon, Chao Shan, Pei-Yong Shi, Luxoiu Huang, Zhaohui Qin, Kimberly Christian, Mingjiang Xu, Menghang Xia, Wei Zheng, Hao Wu, Hongjun Song, Hengli Tang, Guo-li Ming, Peng Jin
10.1101/071183 — Posted: 2016-08-23

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