Channel: University of Chicago

This collection includes bioRxiv and medRxiv papers from authors at University of Chicago.

2493 Articles

Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells

Alain Pacis, Ludovic Tailleux, John Lambourne, Vania Yotova, Anne Dumaine, Anne Danckaert, Francesca Luca, Jean-Christophe Grenier, Kasper Hansen, Brigitte Gicquel, Miao Yu, Athma Pai, Jenny Tung, Chuan He, Tomi Pastinen, Roger Pique-Regi, Yoav Gilad, Luis Barreiro

10.1101/016022 — Posted: 2015-03-04

Permutation Testing in the Presence of Polygenic Variation

Mark Abney

10.1101/014571 — Posted: 2015-01-29

Evolution of Conditional Cooperativity Between HOXA11 and FOXO1 Through Allosteric Regulation

Mauris C. Nnamani, Soumya Ganguly, Vincent J. Lynch, Laura S. Mizoue, Yingchun Tong, Heather Darling, Monika Fuxreiter, Jens Meiler, Gunter P. Wagner

10.1101/014381 — Posted: 2015-01-26

Genetic Variation, Not Cell Type of Origin, Underlies Regulatory Differences in iPSCs

Courtney L Kagan, Nicholas E Banovich, Bryan J Pavlovic, Kristen Patterson, Irene Gallego Romero, Jonathan K Pritchard, Yoav Gilad

10.1101/013888 — Posted: 2015-01-19

Rates of karyotypic evolution in Estrildid finches differ between island and continental clades

Daniel M Hooper, Trevor D Price

10.1101/013987 — Posted: 2015-01-19

Reprogramming LCLs to iPSCs Results in Recovery of Donor-Specific Gene Expression Signature

Samantha M Thomas, Courtney Kagan, Bryan J Pavlovic, Jonathan Burnett, Kristen Patterson, Jonathan K Pritchard, Yoav Gilad

10.1101/013631 — Posted: 2015-01-10

SWS2 visual pigment evolution as a test of historically contingent patterns of plumage color evolution in Warblers

Natasha Bloch, James M Morrow, Belinda SW Chang, Trevor D Price

10.1101/013573 — Posted: 2015-01-09

Accounting for experimental noise reveals that mRNA levels, amplified by post-transcriptional processes, largely determine steady-state protein levels in yeast

Gábor Csárdi, Alexander Franks, David S. Choi, Eduardo M. Airoldi, D. Allan Drummond

10.1101/009472 — Posted: 2014-12-26

msCentipede: Modeling heterogeneity across genomic sites improves accuracy in the inference of transcription factor binding

Anil Raj, Heejung Shim, Yoav Gilad, Jonathan K Pritchard, Matthew Stephens

10.1101/012013 — Posted: 2014-11-29

A multivariate genome-wide association analysis of 10 LDL subfractions, and their response to statin treatment, in 1868 Caucasians

Heejung Shim, Daniel I Chasman, Joshua D Smith, Samia Mora, Paul M Ridker, Deborah A Nickerson, Ronald M Krauss, Matthew Stephens

10.1101/011270 — Posted: 2014-11-09

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