Channel: Vanderbilt University

This collection includes bioRxiv and medRxiv papers from authors at Vanderbilt University.

3113 Articles

IsoSpace: Chemistry-Informed Dimensionality Reduction and Automated Isotope Candidate Detection in Imaging Mass Spectrometry

Meenakshi, M., Migas, L. G., Djambazova, K. V., Dufresne, M., Spraggins, J. M., Van de Plas, R.

10.64898/2025.11.30.691393 — Posted: 2025-12-02

BioLACE: unifying spatial geometry and marker priors for cohesive cell-type clustering in spatial transcriptomics

Qin, H., Hu, Y., Zhu, Y., Baek, J., Yuan, W., Meltzer, S., Zhou, X. M.

10.64898/2025.12.01.691603 — Posted: 2025-12-02

Global multi-ancestry genetic study elucidates genes and biological pathways associated with thyroid cancer and benign thyroid diseases

White, S. L., Brasher, M. S., Pattee, J., Zhou, W., Chapman, S., Jee, Y. H., Bell, C. C., Jamil, T. L., Barrio, M., Hirbo, J., Cox, N. J., Straub, P., Namba, S., Bertucci-Richter, E., Guare, L., EdrisMohammed, A., Morris, S., Mulford, A. J., Zhang, H., Fennessy, B., Tobin, M. D., Chen, J., Williams, A. T., John, C., van Heel, D. A., Mathur, R., Finer, S., Moksnes, M. R., Brumpton, B., Asvold, B. O., Peculis, R., Rovite, V., Konrade, I., Wang, Y., Crooks, K., Chavan, S., Fisher, M. J., Rafaels, N., Lin, M., Shortt, J., Sanders, A. R., Whiteman, D., MacGregor, S., Medland, S., Thorsteinsdottir

10.1101/2025.05.15.25327513 — Posted: 2025-12-02

FET proteins and PARylation-dependent condensates promote replication fork reversal and genome stability

Giansanti, C., Schultz, J. C., Jackson, J., Vindigni, A., Cortez, D.

10.64898/2025.12.01.691651 — Posted: 2025-12-02

Improved Estimation of Correlation Accuracy for Machine Learning Brain-Phenotype Associations

Jones, M. T., Gadiyar, I., Zhang, X., Kang, K., Liu, J., Chen, A., Seidlitz, J., Alexander-Bloch, A., Kennedy, E., Vandekar, S.

10.1101/2025.11.26.690778 — Posted: 2025-12-01

BeadBuddy: user-friendly, nanometer-scale registration of single-molecule imaging data

Clark, F. T., Whitney, P. H., Saiz, N., Ziarno, A., Lionnet, T.

10.1101/2025.11.25.690467 — Posted: 2025-11-30

Cancers modulate p53 truncal neoantigen display to evade T cell detection

Haratani, K., Reinhold, B., Duke-Cohan, J. S., Fahey, C. G., Tan, K., Mallis, R. J., Gusev, A., Kehl, K. L., Luo, J., Holliday, E. L., Masi, D. J., Karmazyn, A., Zienkiewicz, K. J., Hennessey, C. J., Blasco, R. B., Thai, T. C., Gibbons, G. M., Kivlehan, S., Lizotte, P., Paweletz, C. P., Aguirre, A. J., Ligon, K. L., Chiarle, R., Lang, M. J., Barbie, D. A., Reinherz, E. L.

10.1101/2025.11.26.690562 — Posted: 2025-11-30

Brush border intermicrovillar adhesion limits bacterial attachment to the small intestine brush border

Cowell, R. P., Bickart, A. C., Shashi, S. R., Vasquez, A., Brackman, L. C., Abdel-Dayem, M. A., Chen, W., Bowman, D. M., Krystofiak, E. S., Essalki, Y., Gross, I., Harrison, D. G., Wanjalla, C. N., Algood, H. M., Tyska, M. J., Meenderink, L. M.

10.1101/2025.11.25.690363 — Posted: 2025-11-28

Mammary Fibroblasts Secrete Damage Associated Molecular Patterns through Extracellular Vesicles in Response to Ionizing Radiation

Sanchez, G. B., Patel, P., Gomez-Crase, P., Kim, C., Rose, K. L., Rafat, M.

10.1101/2025.11.25.690532 — Posted: 2025-11-28

Improving type 2 diabetes polygenic risk scores by incorporating rare, low-frequency, and population-specific variants

Taylor, K. M., Huerta-Chagoya, A., Wang, X., Vora, M., Li, J., Türk, L., Heng, T. H., Kim, J., Moreno-Estrada, A., Tusie-Luna, T., Aguilar-Salinas, C., Ng, M. C. Y., Martin, H. C., van Heel, D. A., Genes & Health Research Team, , Manning, A. K., Carey, D. J., Palta, P., Kurki, M. I., Finer, S., Ge, T., Mirshahi, U., Zhang, H., Mercader, J. M.

10.1101/2025.11.24.25340878 — Posted: 2025-11-28

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