Channel: University of California, Berkeley

This collection includes bioRxiv and medRxiv papers from authors at University of California, Berkeley.

4246 Articles

Constitutive Androstane Receptor induces Ribonucleotide Reductase-M2 expression and maintains hepatocyte ploidy in mice

Asokaumar, A., Mathur, B., Chou, A., Cronologia, B., Alencastro, F., Wheeler, L., Mathews, C. K., Moore, D. D., Duncan, A. W., Anakk, S.

10.1101/2025.04.29.651109 — Posted: 2025-05-02

Chromatix: a differentiable, GPU-accelerated wave-optics library

Deb, D., Both, G.-J., Bezzam, E., Kohli, A., Yang, S., Chaware, A., Allier, C., Cai, C., Anderberg, G., Eybposh, M. H., Schneider, M. C., Heintzmann, R., Rivera-Sanchez, F. A., Simmerer, C., Meng, G., Tormes-Vaquerano, J., Han, S., Shanmugavel, S. C., Maruvada, T., Yang, X., Kim, Y., Diederich, B., Joo, C., Waller, L., Durr, N. J., Pegard, N. C., La Riviere, P. J., Horstmeyer, R., Chowdhury, S., Turaga, S. C.

10.1101/2025.04.29.651152 — Posted: 2025-05-02

Small molecule bioactivity benchmarks are often well-predicted by counting cells

Seal, S., Dee, W., Shah, A., Zhang, A., Titterton, K., Cabrera, A. A., Boiko, D., Beatson, A., Puigvert, J. C., Singh, S., Spjuth, O., Bender, A., Carpenter, A. E.

10.1101/2025.04.27.650853 — Posted: 2025-04-30

Assemblies of long-read metagenomes suffer from diverse errors

Trigodet, F., Sachdeva, R., Banfield, J. F., Eren, A. M.

10.1101/2025.04.22.649783 — Posted: 2025-04-29

DCAF16-Based Covalent Degradative Handles for the Modular Design of Degraders

Orr, L. M., Tomlinson, S. J., Grupe, H. R., Lim, M., Ho, E., Yilmaz, H., Zhou, G., Leon, B., Olzmann, J. A., Nomura, D. K.

10.1101/2025.04.25.650514 — Posted: 2025-04-29

The biophysical mechanism of mitochondrial pearling

Sturm, G., Hake, K., Lefebvre, A. E. Y. T., Rux, C. J., Ivanova, D., Millett-Sikking, A., Tharp, K. M., Rao, B., Closser, M., Waite, A. J., Precido-Lopez, M., Ritter, A. T., Dumont, S., Lu, W., Manley, S., Landoni, J. C., Marshall, W. F.

10.1101/2024.12.21.629509 — Posted: 2025-04-27

HybriSeq: Probe-based Device-free Single-cell RNA Profiling

Foyt, D., Brown, D., Zhou, S., Moser, B., Zhu, Q., Gartner, Z. J., Huang, B.

10.1101/2023.09.27.559406 — Posted: 2025-04-25

Horizontal saccade bias results from combination of saliency anisotropies and egocentric biases

Reeves, S. M., Otero-Millan, J.

10.1101/2025.04.21.648827 — Posted: 2025-04-24

Systematic cell-type resolved transcriptomes of 8 tissues in 8 lab and wild-derived mouse strains captures global and local expression variation

Rebboah, E., Weber, R., Abdollahzadeh, E., Swarna, N. P., Sullivan, D. K., Trout, D., Reese, F., Liang, H. Y., Filimban, G., Mahdipour, P., Duffield, M., Mojaverzargar, R., Taghizadeh, E., Fattahi, N., Mojgani, N., Zhang, H., Loving, R. K., Carilli, M., Booeshaghi, A. S., Kawauchi, S., Hallgrimsdottir, I. B., Williams, B. A., MacGregor, G., Pachter, L., Wold, B., Mortazavi, A.

10.1101/2025.04.21.649844 — Posted: 2025-04-24

COVID-19 Vaccination Timing, Relative to Acute COVID-19, and Subsequent Risk of Long COVID

Butzin-Dozier, Z., Ji, Y., Wang, L., Anzalone, A. J., Coyle, J., Phillips, R. V., Patel, R. C., Sun, J., Hurwitz, E., Deshpande, S., Shi, J., Mertens, A. N., van der Laan, M., Colford, J. M., Hubbard, A. E., on behalf of the National Clinical Cohort Collaborative

10.1101/2025.04.22.25326224 — Posted: 2025-04-23

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