Channel: University of California, Berkeley

This collection includes bioRxiv and medRxiv papers from authors at University of California, Berkeley.

4093 Articles

Predictive Modeling of Gene Expression and Localization of DNA Binding Site Using Deep Convolutional Neural Networks

Karshenas, A., Roschinger, T., Garcia, H.

10.1101/2024.12.17.629042 — Posted: 2024-12-20

DTPSP: A Deep Learning Framework for Optimized Time Point Selection in Time-Series Single-Cell Studies

Hijazin, M., Shi, P., Wang, J., Ding, J.

10.1101/2024.12.18.629276 — Posted: 2024-12-20

Expanding the HP1a-binding consensus and molecular grammar for heterochromatin assembly

Colmenares, S. U., Tsukamoto, S., Hickmann, C., Brennan, L. D., Khavani, M., Mofrad, M., Karpen, G.

10.1101/2024.12.03.626544 — Posted: 2024-12-20

A Brain-Wide Map of Neural Activity during Complex Behaviour

International Brain Lab, , Benson, B., Benson, J., Birman, D., Bonacchi, N., Bougrova, K., Bruijns, S. A., Carandini, M., Catarino, J. A., Chapuis, G. A., Churchland, A. K., Dan, Y., Davatolhagh, F., Dayan, P., DeWitt, E. E., Engel, T. A., Fabbri, M., Faulkner, M., Fiete, I. R., Findling, C., Freitas-Silva, L., Gercek, B., Harris, K. D., Hausser, M., Hofer, S. B., Hu, F., Hubert, F., Huntenburg, J. M., Khanal, A., Krasniak, C., Langdon, C., Lau, P. Y. P., Mainen, Z. F., Meijer, G. T., Miska, N. J., Mrsic-Flogel, T. D., Noel, J.-P., Nylund, K., Pan-Vazquez, A., Paninski, L., Pouget, A., Rossan

10.1101/2023.07.04.547681 — Posted: 2024-12-20

Tax1bp1 enhances bacterial virulence and promotes inflammatory responses during Mycobacterium tuberculosis infection of alveolar macrophages

Chin, J., Abeydeera, N., Repasy, T., Rivera-Lugo, R., Mitchell, G., Nguyen, V. Q., Zheng, W., Richards, A., Swaney, D. L., Krogan, N. J., Ernst, J. D., Cox, J. S., Budzik, J. M.

10.1101/2024.12.16.628616 — Posted: 2024-12-16

Leucine Aminopeptidase LyLAP enables lysosomal degradation of membrane proteins

Jain, A., Heremans, I., Rademaker, G., Detomasi, T., Rohweder, P., Anderson, D., Zhang, J., Hernandez, G., Gupta, S., von Linde, T., Lange, M., Spacci, M., Citron, Y., Olzmann, J., Dawson, D., Craik, C., Bommer, G., Perera, R. M., Zoncu, R.

10.1101/2024.12.13.628212 — Posted: 2024-12-14

Effects of commonly used antibiotics on children's developing gut microbiomes and resistomes in peri-urban Lima, Peru

Sehgal, N., Pajuelo, M. J., Gilman, R. H., Pickering, A. J., Earl, A. M., Worby, C. J., Nadimpalli, M. L.

10.1101/2024.12.13.24317790 — Posted: 2024-12-14

Stu2 has an essential kinetochore role independent of regulating microtubule dynamics

Abouelghar, A. A., Carrier, J. S., Torvi, J. R., Jenson, E., Jones, C., Gangadharan, B., Geyer, E. A., Rice, L., Lagesse, B., Barnes, G., Miller, M. P.

10.1101/2022.09.09.507218 — Posted: 2024-12-14

Deep profiling of plant stress biomarkers following bacterial pathogen infection with protein corona based nano-omics

Coreas, R., Sridhar, N., Lin, T.-J., Squire, H. J., Voke, E., Landry, M. P.

10.1101/2024.12.12.627884 — Posted: 2024-12-13

Pneumococcal serotype distribution and coverage of existing and pipeline pneumococcal vaccines

King, L. M., Andrejko, K. L., Kobayashi, M., Xing, W., Cohen, A. L., Self, W. H., Resser, J. J., Whitney, C. G., Baughman, A., Kio, M., Grijalva, C. G., Traenkner, J., Rouphael, N., Lewnard, J. A.

10.1101/2024.12.12.24318944 — Posted: 2024-12-13

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