Channel: University of California, San Francisco

This collection includes bioRxiv and medRxiv papers from authors at University of California, San Francisco.

2647 Articles

PhIP-Seq uncovers novel autoantibodies and unique endotypes in interstitial lung disease

Upadhyay, V., Yoon, Y. m., Vazquez, S. E., Velez, T. E., Jones, K. D., Lee, C. T., Law, C. S., Wolters, P. J., Lee, S., Yang, M. M., Farrand, E., Noth, I., Strek, M. E., Anderson, M., DeRisi, J., Sperling, A. I., Shum, A. K.

10.1101/2023.04.24.538091 — Posted: 2023-04-24

Codon affinity in mitochondrial DNA shapes evolutionary and somatic fitness

Lareau, C. A., Yin, Y., Gutierrez, J. C., Dhindsa, R. S., Gribling-Burrer, A.-S., Hsieh, Y.-H., Nitsch, L., Buquicchio, F. A., Abay, T., Zielinski, S., Stickels, R. R., Ulirsch, J. C., Yan, P., Wang, F., Miao, Z., Sandor, K., Daniel, B., Liu, V., Wang, Q., Hu, F., Smith, K. R., Deevi, S. V. V., Maschmeyer, P., Petrovski, S., Smyth, R. P., Greenleaf, W. J., Kundaje, A., Munschauer, M., Ludwig, L. S., Satpathy, A. T.

10.1101/2023.04.23.537997 — Posted: 2023-04-23

Chemical stimuli override a temperature-dependent morphological program by reprogramming the transcriptome of a fungal pathogen.

Assa, D., Voorhies, M., Sil, A.

10.1101/2023.04.21.537729 — Posted: 2023-04-22

Disease Tolerance Acquired Through Repeated Plasmodium Infection Involves Epigenetic Reprogramming of Innate Immune Cells

Nideffer, J., Ty, M., Donato, M., Rek, J., Kajubi, R., Ji, X., Maecker, H., Nankya, F., Musinguzi, K., Press, K., Greenhouse, B., Kamya, M., Feeney, M. E., Dorsey, G., Utz, P., Pulendran, B., Khatri, P., Jagannathan, P.

10.1101/2023.04.19.537546 — Posted: 2023-04-21

Conserved enhancer logic controls the notochord expression of vertebrate Brachyury

Kemmler, C. L., Smolikova, J., Moran, H. R., Mannion, B. J., Knapp, D., Lim, F., Czarkwiani, A., Hermosilla Aguayo, V., Rapp, V., Fitch, O. E., Boetschi, S., Selleri, L., Farley, E., Braasch, I., Yun, M., Visel, A., Osterwalder, M., Mosimann, C., Kozmik, Z., Burger, A.

10.1101/2023.04.20.536761 — Posted: 2023-04-20

Revealing the Grammar of Small RNA Secretion Using Interpretable Machine Learning

Zirak, B., Naghipourfar, M., Saberi, A., Pouyabahar, D., Zarezadeh, A., Luo, L., Fish, L., Huh, D., Navickas, A., Sharifi-Zarchi, A., Goodarzi, H.

10.1101/2023.04.04.535452 — Posted: 2023-04-20

In Vitro Modeling of CD8 T Cell Exhaustion Enables CRISPR Screening to Reveal a Role for BHLHE40

Wu, J. E., Manne, S., Ngiow, S. F., Baxter, A. E., Huang, H., Freilich, E., Clark, M. L., Lee, J. H., Chen, Z., Khan, O., Staupe, R. P., Huang, Y. J., Shi, J., Giles, J. R., Wherry, E. J.

10.1101/2023.04.17.537229 — Posted: 2023-04-19

Finding the right tool: a comprehensive evaluation of microglial inducible cre mouse models

Bedolla, A. M., McKinsey, G., Ware, K., Santander, N., Arnold, T., Luo, Y.

10.1101/2023.04.17.536878 — Posted: 2023-04-17

Axon initial segment GABA inhibits action potential generation throughout periadolescent development

Lipkin, A. M., Bender, K. J.

10.1101/2023.04.16.537084 — Posted: 2023-04-16

Total Chemical Synthesis of Glycosylated TREM2 Ectodomain

Wijegunawardena, G., Castillo, E., Henrickson, B., Davis, R., Condello, C., Wu, H.

10.1101/2023.04.14.536909 — Posted: 2023-04-14

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