Channel: University of California, San Francisco

This collection includes bioRxiv and medRxiv papers from authors at University of California, San Francisco.

2749 Articles

Gene regulatory network inference from CRISPR perturbations in primary CD4+ T cells elucidates the genomic basis of immune disease

Weinstock, J. S., Arce, M. M., Freimer, J. W., Ota, M., Marson, A., Battle, A., Pritchard, J. K.

10.1101/2023.09.17.557749 — Posted: 2023-10-24

Exploring the Roles of RNAs in Chromatin Architecture Using Deep Learning

Kuang, S., Pollard, K. S.

10.1101/2023.10.22.563498 — Posted: 2023-10-24

Context-invariant socioemotional encoding by prefrontal ensembles

Frost, N. A., Donohue, K. C., Sohal, V.

10.1101/2023.10.19.563015 — Posted: 2023-10-23

Multiomics characterization of cell type repertoires for urine liquid biopsies

Vorperian, S. K., DeFelice, B. C., Buonomo, J. A., Chinchinian, H. J., Gray, I. J., Yan, J., Mach, K. E., La, V., Lee, T. J., Liao, J. C., Lafayette, R., Loeb, G. B., Bertozzi, C. R., Quake, S. R.

10.1101/2023.10.20.563226 — Posted: 2023-10-23

Diffusion Deep Learning for Brain Age Prediction and Longitudinal Tracking in Children Through Adulthood

Zapaishchykova, A., Tak, D., Ye, Z., Liu, K. X., Likitlersuang, J., Vajapeyam, S., Chopra, R. B., Seidlitz, J., Bethlehem, R. A., Lifespan Brain Chart Consortium, , Mak, R. H., Mueller, S., Haas-Kogan, D. A., Poussaint, T. Y., Aerts, H. J. W. L., Kann, B. H.

10.1101/2023.10.17.23297166 — Posted: 2023-10-23

S-BEAM: A Semi-Supervised Ensemble Approach to Rank Potential Causal Variants and Their Target Genes in Microglia for Alzheimer's Disease

Khaire, A., Wen, J., Yang, X., Zhou, H., Shen, Y., Li, Y.

10.1101/2022.11.01.514771 — Posted: 2023-10-23

Micrococcin cysteine-to-thiazole conversion through transient interactions between a scaffolding protein and two modification enzymes

Calvopina-Chavez, D. G., Bursey, D. M., Tseng, Y.-J., Patil, L. M., Bewley, K. D., Bennallack, P. R., McPhie, J. M., Wagstaff, K. B., Daley, A., Miller, S. M., Moody, J. D., Price, J. C., Griffitts, J. S.

10.1101/2023.10.23.563616 — Posted: 2023-10-23

Anti-CRISPR proteins trigger a burst of CRISPR-Cas9 expression that enhances phage defense

Workman, R. E., Stoltzfus, M. J., Keith, N. C., Euler, C. W., Bondy-Denomy, J., Modell, J. W.

10.1101/2023.10.22.562561 — Posted: 2023-10-22

Response to antibiotic treatment of bacterial vaginosis predicts the effectiveness of LACTIN-V (Lactobacillus crispatus CTV-05) in the prevention of recurrent disease

Hemmerling, A., Wierzbicki, M. R., Armstrong, E., Cohen, C. R.

10.1101/2023.10.19.23297283 — Posted: 2023-10-20

Tumor-wide RNA splicing aberrations generate immunogenic public neoantigens

Kwok, D. W., Stevers, N. O., Nejo, T., Chen, L. H., Etxeberria, I., Jung, J., Okada, K., Colton Cove, M., Lakshmanachetty, S., Gallus, M., Barpanda, A., Hong, C., Chan, G. K. L., Wu, S. H., Ramos, E., Yamamichi, A., Liu, J. Y. Z., Watchmaker, P., Ogino, H., Saijo, A., Du, A., Grishanina, N., Woo, J., Diaz, A., Chang, S. M., Phillips, J. J., Wiita, A., Klebanoff, C. A., Costello, J. F., Okada, H.

10.1101/2023.10.19.563178 — Posted: 2023-10-20

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