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HAMAP rules as SPARQL - A portable annotation pipeline for genomes and proteomes
Bolleman, J., de Castro, E., Baratin, D., Gehant, S., Cuche, B. A., Auchincloss, A., COUDERT, E., Hulo, C., Masson, P., Pedruzzi, I., Rivoire, C., Xenarios, I., Redaschi, N., Bridge, A.
10.1101/615294 — Posted: 2019-04-24 — Discussion: 2022-01-23  GigaScience
Trochodendron aralioides, the first chromosome-level draft genome in Trochodendrales and a valuable resource for basal eudicot research
Strijk, J. S., Hinsinger, D. D., Zhang, F.-P., Cao, K.
10.1101/650424 — Posted: 2019-05-26 — Discussion: 2022-01-23  GigaScience
Genomic diversity affects the accuracy of bacterial SNP calling pipelines
Bush, S. J., Foster, D., Eyre, D. W., Clark, E. L., De Maio, N., Shaw, L. P., Stoesser, N., Peto, T. E. A., Crook, D. W., Walker, A. S.
10.1101/653774 — Posted: 2019-05-31 — Discussion: 2022-01-23  GigaScience
Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding?
Kadota, M., Nishimura, O., Miura, H., Tanaka, K., Hiratani, I., Kuraku, S.
10.1101/659623 — Posted: 2019-06-07 — Discussion: 2022-01-23  GigaScience
ShinyLearner: A containerized benchmarking tool for machine-learning classification of tabular data
Piccolo, S. R., Lee, T. J., Suh, E., Hill, K.
10.1101/675181 — Posted: 2019-06-19 — Discussion: 2022-01-23  GigaScience
The draft nuclear genome assembly of Eucalyptus pauciflora: new approaches to comparing de novo assemblies
wang, w., Das, A., Kainer, D., Schalamun, M., Morales Suarez, A., Schwessinger, B., Lanfear, R.
10.1101/678730 — Posted: 2019-06-21 — Discussion: 2022-01-23  GigaScience
RepeatFiller newly identifies megabases of aligning repetitive sequences and improves annotations of conserved non-exonic elements
Osipova, E., Hecker, N., Hiller, M.
10.1101/696922 — Posted: 2019-07-09 — Discussion: 2022-01-23  GigaScience
RootNav 2.0: Deep Learning for Automatic Navigation of Complex Plant Root Architectures
Yasrab, R., Atkinson, J. A., Wells, D. M., French, A. P., Pridmore, T. P., Pound, M. P.
10.1101/709147 — Posted: 2019-07-20 — Discussion: 2022-01-23  GigaScience
Assessment of human diploid genome assembly with 10x Linked-Reads data
Zhang, L., Zhou, X., Weng, Z., Sidow, A.
10.1101/729608 — Posted: 2019-08-08 — Discussion: 2022-01-23  GigaScience
Inferring putative ancient whole genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions
Li, Z., Barker, M. S.
10.1101/735076 — Posted: 2019-08-14 — Discussion: 2022-01-23  GigaScience

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