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455 Reviews — All Partners — Genomics

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Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics and epigenetics data
Nguyen, Q. H., Tellam, R. L., Naval-Sanchez, M., Porto-Neto, L., Barendse, B. W., Reverter-Gomez, T., Hayes, B., Kijas, J., Dalrymple, B. P.
10.1101/143990 — Posted: 2017-06-05 — Discussion: 2022-01-22  GigaScience
MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks
Peng, Y., Tang, S., WANG, D., Zhong, H., Jia, H., Cai, X., Zhang, Z., Xiao, M., Yang, H., Wang, J., Kristiansen, K., Xu, X., li, j.
10.1101/398636 — Posted: 2018-08-24 — Discussion: 2022-01-22  GigaScience
BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
Huang, M., Liu, X., Zhou, Y., Summers, R. M., Zhang, Z.
10.1101/227249 — Posted: 2017-11-30 — Discussion: 2022-01-22  GigaScience
Entering the era of conservation genomics: Cost-effective assembly of the African wild dog genome using linked long reads
Armstrong, E. E., Taylor, R. W., Prost, S., Blinston, P., van der Meer, E., Madzikanda, H., Mufute, O., Mandisodza, R., Steulpnagel, J., Sillero-Zubiri, C., Petrov, D.
10.1101/195180 — Posted: 2017-09-27 — Discussion: 2022-01-22  GigaScience
Single molecule, full-length transcript sequencing provides insight into the extreme metabolism of ruby-throated hummingbird Archilochus colubris
Workman, R. E., Myrka, A. M., Tseng, E., Wong, G. W., Welch, K. C., Timp, W.
10.1101/117218 — Posted: 2017-03-15 — Discussion: 2022-01-22  GigaScience
Analysis of the Aedes albopictus C6/36 genome provides insight into cell line adaptations to in vitro viral propagation
Miller, J. R., Koren, S., Dilley, K. A., Puri, V., Brown, D. M., Harkins, D. M., Thibaud-Nissen, F., Rosen, B., Chen, X.-G., Tu, Z., Sharakhov, I. V., Sharakhova, M. V., Sebra, R., Stockwell, T. B., Bergman, N. H., Sutton, G. G., Phillippy, A. M., Piermarini, P. M., Shabman, R. S.
10.1101/157081 — Posted: 2017-06-30 — Discussion: 2022-01-21  GigaScience
Inter-tissue convergence of gene expression and loss of cellular identity during ageing
Izgi, H., Han, D., Isildak, U., Huang, S., Kocabiyik, E., Khaitovich, P., Somel, M., Dönertas, H. M.
10.1101/2021.03.02.432281 — Posted: 2021-03-02 — Discussion: 2022-01-18  eLife
Ancient genomes redate the extinction of Sussemionus, a subgenus of Equus, to late Holocene
Cai, D., Zhu, S., Gong, M., Zhang, N., Wen, J., Liang, Q., Sun, W., Shao, X., Guo, Y., Cai, Y., Zheng, Z., Zhang, W., Hu, S., Wang, X., Tian, H., Li, Y., Liu, W., Yang, M., Yang, J., Wu, D., Orlando, L., Jiang, Y.
10.1101/2021.09.13.460072 — Posted: 2021-09-16 — Discussion: 2022-01-17  eLife
Unexpected gene activation following CRISPR-Cas9-mediated genome editing
Manjon, A. G., Teunissen, H., de Wit, E., Medema, R. H.
10.1101/2021.06.14.448328 — Posted: 2021-06-14 — Discussion: 2022-01-15  EMBO Press
Genetic Control of Pluripotency Epigenome Determines Differentiation Bias in Mouse Embryonic Stem Cells
Byers, C., Spruce, C., Fortin, H. J., Czechanski, A., Munger, S. C., Reinholdt, L. G., Skelly, D. A., Baker, C. L.
10.1101/2021.01.15.426861 — Posted: 2021-01-16 — Discussion: 2022-01-15  EMBO Press

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