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475 Reviews — All Partners — Genomics

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Genetic Analyses of Epigenetic Predictors that Estimate Aging, Metabolic Traits, and Lifespan
Mozhui, K., Lu, A., Li, C. Z., Haghani, A., Sandoval-Sierra, J. V., Williams, R. W., Horvath, S.
10.1101/2021.06.23.449634 — Posted: 2021-06-24 — Discussion: 2022-01-31  eLife
Chromosome-level assembly of the common vetch reference genome (Vicia sativa)
Xi, H., nguyen, V., Ward, C. M., Searle, I. R.
10.1101/2021.10.11.464017 — Posted: 2021-10-13 — Discussion: 2022-01-31  Gigabyte
Draft genome sequence of the Solanum aethiopicum provides insights into disease resistance, drought tolerance and the evolution of the genome
Song, B., Song, Y., Fu, Y., Kizito, E. B., Kabod, P. N., Liu, H., Kamenya, S. N., Muthemba, S., Kariba, R., Li, X., Wang, S., Cheng, S., Muchugi, A., Jamnadass, R., Shapiro, H.-Y., Deynze, A. V., Yang, H., Wang, J., Xu, X., Odeny, D. A., Liu, X.
10.1101/532077 — Posted: 2019-01-28 — Discussion: 2022-01-31  GigaScience
Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods
Courtine, D., Provaznik, J., Reboul, J., Blanc, G., Benes, V., Ewbank, J. J.
10.1101/866020 — Posted: 2019-12-06 — Discussion: 2022-01-24  GigaScience
Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacbio Sequel II system and ultralong reads of Oxford Nanopore
Lang, D., Zhang, S., Ren, P., Liang, F., Sun, Z., Meng, G., Tan, Y., Hu, J., Li, X., Lai, Q., Han, L., Wang, D., Hu, F., Wang, W., Liu, S.
10.1101/2020.02.13.948489 — Posted: 2020-02-14 — Discussion: 2022-01-24  GigaScience
Sequencing smart: De novo sequencing and assembly approaches for non-model mammals.
Etherington, G. J., Heavens, D., Baker, D., Lister, A., McNelly, R., Garcia Accinelli, G., Clavijo, B. J., Macaulay, I., Haerty, W., Di Palma, F.
10.1101/723890 — Posted: 2019-08-05 — Discussion: 2022-01-24  GigaScience
Chromatin conformation capture (Hi-C) sequencing of patient-derived xenografts: analysis guidelines
Dozmorov, M. G., Tyc, K. M., Sheffield, N. C., Boyd, D. C., Olex, A. L., Reed, J., Harrell, J. C.
10.1101/2020.10.17.343814 — Posted: 2020-10-17 — Discussion: 2022-01-24  GigaScience
The Gene-Rich Genome of the Scallop Pecten maximus
Kenny, N. J., McCarthy, S. A., Dudchenko, O., James, K., Betteridge, E., Corton, C., Dolucan, J., Mead, D., Oliver, K., Omer, A. D., Pelan, S., Ryan, Y., Sims, Y., Skelton, J., Smith, M., Torrance, J., Weisz, D., Wipat, A., Aiden, E. L., Howe, K., Williams, S. T.
10.1101/2020.01.08.887828 — Posted: 2020-01-09 — Discussion: 2022-01-24  GigaScience
Framework for determining accuracy of RNA sequencing data for gene expression profiling of single samples
Beale, H. C., Roger, J., Cattle, M., McKay, L., Learned, K., Lyle, G., Kephart, E., Currie, R., Lam, D. L., Sanders, L., Pfeil, J., Vivian, J., Bjork, I., Salama, S., Haussler, D., Vaske, O.
10.1101/716829 — Posted: 2019-07-30 — Discussion: 2022-01-24  GigaScience
A chromosome-level genome assembly for the Eastern Fence Lizard (Sceloporus undulatus), a reptile model for physiological and evolutionary ecology
Westfall, A. K., Telemeco, R. S., Grizante, M. B., Waits, D. S., Clark, A. D., Simpson, D. Y., Klabacka, R. L., Sullivan, A. P., Perry, G. H., Sears, M. W., Cox, C. L., Cox, R. M., Gifford, M. E., John-Alder, H. B., Langkilde, T., Angilletta, M., Leache, A., Tollis, M., Kusumi, K., Schwartz, T. S.
10.1101/2020.06.06.138248 — Posted: 2020-06-06 — Discussion: 2022-01-24  GigaScience

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