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Using synthetic RNA to benchmark poly(A) length inference from direct RNA sequencing.
Chang, J. J.-Y., Yang, X., Teng, H., Reames, B., Corbin, V., Coin, L. J. M.
10.1101/2024.10.25.620206 — Posted: 2024-10-25 — Discussion: 2025-09-30  GigaScience
CNSistent integration and feature extraction from somatic copy number profiles
Streck, A., Schwarz, R. F.
10.1101/2024.12.23.630118 — Posted: 2024-12-23 — Discussion: 2025-09-30  GigaScience
A high-quality reference genome for the Ural Owl (Strix uralensis) enables investigations of cell cultures as a genomic resource for endangered species
Chrysostomakis, I., Mozer, A., Bruno Di-Nizo, C., Fischer, D., Sargheini, N., von der Mark, L., Huettel, B., Astrin, J. J., Toepfer, T., Boehne, A.
10.1101/2025.01.22.633903 — Posted: 2025-01-24 — Discussion: 2025-09-30  GigaScience
WaveSeekerNet: Accurate Prediction of Influenza A Virus Subtypes and Host Source Using Attention-Based Deep Learning
Nguyen, H.-H., Rudar, J., Lesperance, N., Vernygora, O., Taylor, G. W., Laing, C., Lapen, D., Leung, C. K., Lung, O.
10.1101/2025.02.25.639900 — Posted: 2025-02-28 — Discussion: 2025-09-30  GigaScience
Haplotype-resolved reference genomes of the sea turtle clade unveil ultra-syntenic genomes with hotspots of divergence
Arantes, L. S., Brown, T., De Panis, D., Whiting, S. D., LaCasella, E. L., Carvajal, G. A., Kennedy, A., Edmunds, D., Bentley, B. P., Balacco, J., Whelan, C., Jain, N., Tilley, T., O'Toole, B., Traore, P., Jarvis, E. D., Berry, O., Dutton, P. H., Komoroske, L. M., Mazzoni, C. J.
10.1101/2025.03.26.644878 — Posted: 2025-03-28 — Discussion: 2025-09-30  GigaScience
Differential cell survival outcomes in response to diverseamino acid stress
Murray, P. J., Russier, M., Fiore, A., Gross, A., Tanzer, M., Yeroslaviz, A., Mann, M.
10.1101/2025.04.01.646536 — Posted: 2025-04-01 — Discussion: 2025-09-30  EMBO Press
Comparing Linear and Nonlinear Finite Element Models of Vertebral Strength Across the Thoracolumbar Spine: A Benchmark from Density-Calibrated Computed Tomography
Walle, M., Matheson, B. E., Boyd, S. K.
10.1101/2025.04.19.649449 — Posted: 2025-04-23 — Discussion: 2025-09-30  GigaScience
A comprehensive water buffalo pangenome reveals extensive structural variation linked to population specific signatures of selection
Arshad, F., Jayaraman, S., Talenti, A., Owen, R., Mohsin, M., Mansoor, S., Asif, M., Prendergast, J. G.
10.1101/2025.05.04.652079 — Posted: 2025-05-09 — Discussion: 2025-09-30  GigaScience
The vaccine candidate Liver Stage Antigen 3 is exported during Plasmodium falciparum infection and required for liver-stage development in humanized mice
McConville, R., Steel, R. W., O'Neill, M. T., Cowman, A. F., Kneteman, N., Boddey, J. A.
10.1101/2025.07.18.665593 — Posted: 2025-07-19 — Discussion: 2025-09-30  eLife
Tracking maternal proteins uncovers a central role for the residual body in organelle recycling during Toxoplasma gondii replication
von Knoerzer-Suckow, J., Sazegar, P., Periz, J., Gras, S., Meissner, M.
10.1101/2025.08.15.670481 — Posted: 2025-08-18 — Discussion: 2025-09-30  eLife

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