bioRxiv/medRxiv TRiP Review Activity

435 Reviews — All Partners — Genomics

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Regulation of Chromatin Architecture by Transcription Factor Binding

Portillo, S., Chung, S., Hoffman, J., Schlick, T.

10.1101/2023.09.26.559535 — Posted: 2023-09-27 — Discussion: 2023-12-15 eLife

Long-read single-cell sequencing reveals expressions of hypermutation clusters of isoforms in human liver cancer cells

Liu, S., Yu, Y., Ren, B.-G., Yehezkel, T., Obert, C., Smith, M., Wang, W., Ostrowska, A., Soto-Gutierrez, A., Luo, J.

10.1101/2023.03.16.532991 — Posted: 2023-03-20 — Discussion: 2023-12-15 eLife

Nucleosome conformation dictates the histone code

Marunde, M. R., Fuchs, H. A., Burg, J. M., Popova, I. K., Vaidya, A., Hall, N. W., Meiners, M. J., Watson, R., Howard, S. A., Novitzky, K., McAnarney, E., Cheek, M. A., Sun, Z.-W., Venters, B. J., Keogh, M.-C., Musselman, C. A.

10.1101/2022.02.21.481373 — Posted: 2022-02-22 — Discussion: 2023-12-03 eLife

Plasma Growth Hormone Pulsatility Directly Regulates Male-biased Chromatin Accessibility in Adult Mouse Liver

Rampersaud, A., Connerney, J., Waxman, D. J.

10.1101/2023.08.21.554153 — Posted: 2023-08-22 — Discussion: 2023-11-24 eLife

Opposing, spatially-determined epigenetic forces impose restrictions on stochastic olfactory receptor choice

Bashkirova, E., Klimpert, N., Pourmorady, A., Monahan, K., Campbell, C., Osinski, J., Tan, L., Schieren, I., Stecky, R., Barnea, G., Xie, X. S., Abdus-Saboor, I., Shykind, B., Marlin, B. J., Gronostajski, R., Fleischmann, A., Lomvardas, S.

10.1101/2023.03.15.532726 — Posted: 2023-03-15 — Discussion: 2023-11-21 eLife

A reference assembly for the legume cover crop, hairy vetch (Vicia villosa)

Fuller, T., Koch, L. M., Kucek, L. K., Ali, S., Mangelson, H., Hernandez, T., Smith, T. P. L., Bickhart, D. M., Riday, H., Sullivan, M. L.

10.1101/2023.03.28.534423 — Posted: 2023-03-29 — Discussion: 2023-11-17 Gigabyte

DAJIN-assisted multiplex genotyping to validate the outcomes of CRISPR-Cas-based genome editing

Kuno, A., Ikeda, Y., Ayabe, S., Kato, K., Sakamoto, K., Suzuki, S., Morimoto, K., Wakimoto, A., Mikami, N., Ishida, M., Iki, N., Hamada, Y., Takemura, M., Daitoku, Y., Tanimoto, Y., Dinh, T. T., Murata, K., Hamada, M., Yoshiki, A., Sugiyama, F., Takahashi, S., Mizuno, S.

10.1101/2020.12.14.422641 — Posted: 2020-12-14 — Discussion: 2023-11-14 Review Commons

Regulation of Nuclear Transcription by Mitochondrial RNA

Sriram, K., Qi, Z., Yuan, D., Malhi, N. K., Liu, X., Calandrelli, R., Luo, Y., Jin, S., Shi, J., Salas, M., Dang, R., Armstrong, B., Priceman, S. J., Wang, P., Liao, J., Natarajan, R., Zhong, S., Chen, Z. B.

10.1101/2022.12.10.519922 — Posted: 2022-12-11 — Discussion: 2023-11-04 eLife

Microhomology-Mediated Circular DNA Formation from Oligonucleosomal Fragments During Spermatogenesis

Hu, J., Zhang, Z., Xiao, S., Cao, Y., Chen, Y., Weng, J., Jiang, H., Li, W., Chen, J.-Y., Liu, C.

10.1101/2023.02.27.530352 — Posted: 2023-03-01 — Discussion: 2023-10-04 eLife

A Database of Restriction Maps to Expand the Utility of Bacterial Artificial Chromosomes

Winden, E., Alejandro Vasquez-Echeverri, A., Calle-Casteneda, S., Lian, Y., Hernandez-Ortiz, J. P., Schwartz, D. C.

10.1101/2023.03.31.535162 — Posted: 2023-04-02 — Discussion: 2023-09-25 Gigabyte