bioRxiv/medRxiv TRiP Review Activity

436 Reviews — All Partners — Genomics

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An improved chromosome-level genome assembly of perennial ryegrass (Lolium perenne L.)
Chen, Y., Koelliker, R., Mascher, M., Copetti, D., Himmelbach, A., Stein, N., Studer, B.
10.1101/2023.12.05.570088 — Posted: 2023-12-05 — Discussion: 2024-03-18  Gigabyte
Transcription decouples estrogen-dependent changes in enhancer-promoter contact frequencies and physical proximity
Gomez Acuna, L. I., Flyamer, I., Boyle, S., Friman, E. T., Bickmore, W. A.
10.1101/2023.03.29.534720 — Posted: 2023-03-29 — Discussion: 2024-03-18  Review Commons
YY1 binding is a gene-intrinsic barrier to Xist-mediated gene silencing
Bowness, J., Almeida, M., Nesterova, T., Brockdorff, N.
10.1101/2023.11.22.568288 — Posted: 2023-11-23 — Discussion: 2024-03-18  Review Commons
Integrated multiplexed assays of variant effect reveal cis-regulatory determinants of catechol-O-methyltransferase gene expression
Hoskins, I., Rao, S., Tante, C., Cenik, C.
10.1101/2023.08.02.551517 — Posted: 2023-08-05 — Discussion: 2024-03-18  Review Commons
DNA-binding factor footprints and enhancer RNAs identify functional non-coding genetic variants
Biddie, S. C., Hird, E. F., Weykopf, G., Friman, E. T., Bickmore, W. A.
10.1101/2023.11.20.567860 — Posted: 2023-11-20 — Discussion: 2024-03-18  Review Commons
Switching of RNA splicing regulators in immature neuroblasts: a key step in adult neurogenesis
Bernou, C., Mouthon, M.-A., Daynac, M., Demaille, B., Barroca, V., Couillard-Despres, S., Dechamps, N., Menard, V., Bellenger, L., Antoniewski, C., Chicheportiche, A., Boussin, F. D.
10.1101/2023.03.12.532290 — Posted: 2023-03-14 — Discussion: 2024-03-13  eLife
Data-driven design of a tool to promote the investigation of understudied genes
Richardson, R. A. K., Tejedor Navarro, H., Amaral, L. A. N., Stoeger, T.
10.1101/2023.02.28.530483 — Posted: 2023-03-01 — Discussion: 2024-03-11  eLife
NERD-seq: A novel approach of Nanopore direct RNA sequencing that expands representation of non-coding RNAs
Saville, L., Cheng, Y., Gollen, B., Mitchell, L., Stuart-Edwards, M., Haight, T., Mohajerani, M., Zovoilis, A.
10.1101/2021.05.06.442990 — Posted: 2021-05-07 — Discussion: 2024-03-11  Review Commons
Multiomics of human aortic endothelial cells reveals cell subtypes with heterogeneous responses to canonical endothelial-to-mesenchymal perturbations
Adelus, M. L., Ding, J., Tran, B. T., Conklin, A. C., Golebiewski, A. K., Stolze, L. K., Whalen, M. B., Cusanovich, D., Romanoski, C. E.
10.1101/2023.04.03.535495 — Posted: 2023-04-06 — Discussion: 2024-03-01  eLife
Near chromosome-level and highly repetitive genome assembly of the snake pipefish Entelurus aequoreus (Syngnathiformes: Syngnathidae)
Wolf, M., Ferrette, B. L. S., Coimbra, R. T. F., de Jong, M., Nebenfuehr, M., Prochotta, D., Schoeneberg, Y., Zapf, K., Rosenbaum, J., Mc Intyre, H. A., Maier, J., de Souza, C. C. S., Gehlhaar, L. M., Werner, M. J., Oechler, H., Wittekind, M., Sonnewald, M., Nilsson, M. A., Janke, A., Winter, S.
10.1101/2023.12.12.571260 — Posted: 2023-12-13 — Discussion: 2024-02-14  Gigabyte

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