Channel:  Johns Hopkins University

This collection includes bioRxiv and medRxiv papers from authors at Johns Hopkins University.

6417 Articles

Transcriptome Analysis of Cortical Tissue Reveals Shared Sets of Down-Regulated Genes in Autism and Schizophrenia
Shannon E Ellis, Rebecca Panitch, Andrew West, Dan E Arking
10.1101/029132 — Posted: 2016-02-18
Next-generation sequencing in neuropathological diagnosis of infections of the nervous system
Steven L. Salzberg, Florian Breitwieser, Anupama Kumar, Haiping Hao, Peter Burger, Fausto J. Rodriguez, Michael Lim, Alfredo Quinones-Hinojosa, Gary L. Gallia, Jeffrey A. Tornheim, Michael T. Melia, Cynthia L. Sears, Carlos A. Pardo
10.1101/039222 — Posted: 2016-02-09
Information-dependent Enrichment Analysis Reveals Time-dependent Transcriptional Regulation of the Estrogen Pathway of Toxicity
Salil N. Pendse, Alexandra Maertens, Michael Rosenberg, Dipanwita Roy, Rick A. Fasani, Marguerite M. Vantangoli, Samantha J. Madnick, Kim Boekelheide, Albert J. Fornace, James D. Yager, Thomas Hartung, Melvin E. Andersen, Patrick D. McMullen
10.1101/038570 — Posted: 2016-02-04
Human splicing diversity across the Sequence Read Archive
Abhinav Nellore, Andrew E Jaffe, Jean-Philippe Fortin, José Alquicira-Hernández, Leonardo Collado-Torres, Siruo Wang, Robert A Phillips, Nishika Karbhari, Kasper D Hansen, Ben Langmead, Jeffrey T Leek
10.1101/038224 — Posted: 2016-01-29
Real-time predictions of reservoir size and rebound time during antiretroviral therapy interruption trials for HIV
Alison L Hill, Daniel Scholes Rosenbloom, Edward Goldstein, Emily Hanhauser, Daniel R Kuritzkes, Robert F Siliciano, Timothy J Henrich
10.1101/038091 — Posted: 2016-01-28
Winners curse correction and variable thresholding improve performance of polygenic risk modeling based on summary-level data from genome-wide association studies
Jianxin Shi, JuHyun Park, Jubao Duan, Sonja Berndt, Winton Moy, William Wheeler, Xing Hua, Debra Silverman, Montserrat Garcia-Closas, Chao Agnes Hsiung, Jonine D. Figueroa, Victoria K. Cortessis, Nuria Malats, Margaret R. Karagas, Paolo Vineis, I-Shou Chang, Dongxin Lin, Baosen Zhou, Adeline Seow, Keitaro Matsuo, Yun-Chul Hong, Neil E. Caporaso, Brian Wolpin, Eric Jacobs, Gloria Petersen, Donghui Li, Harvey Risch, Alan R. Sanders, Li Hsu, Robert E. Schoen, Hermann Brenner, Rachael Stolzenberg-Solomon, Pablo Gejman, Qing Lan, Nathaniel Rothman, Laufey T. Amundadottir, Alison P. Klein, Maria Teresa Landi, Douglas F. Levinson, Stephen
10.1101/034082 — Posted: 2016-01-10
RASLseqTools: open-source methods for designing and analyzing RNA-mediated oligonucleotide Annealing, Selection, and, Ligation sequencing (RASL-seq) experiments
Erick R. Scott, H. Benjamin Larman, Ali Torkamani, Nicholas J. Schork, Nathan Wineinger, Max Nanis, Ryan C. Thompson, Reza B. Beheshti Zavareh, Luke L. Lairson, Peter G. Schultz, Andrew I. Su
10.1101/036061 — Posted: 2016-01-07
Genome-wide Prediction of DNase I Hypersensitivity Using Gene Expression
Weiqiang Zhou, Ben Sherwood, Zhicheng Ji, Fang Du, Jiawei Bai, Hongkai Ji
10.1101/035808 — Posted: 2016-01-03
Global Prediction of Chromatin Accessibility Using RNA-seq from Small Number of Cells
Weiqiang Zhou, Zhicheng Ji, Hongkai Ji
10.1101/035816 — Posted: 2016-01-03
A protein truncating R179X variant in RNF186 confers protection against ulcerative colitis
Manuel A Rivas, Daniel Graham, Patrick Sulem, Christine Stevens, Nicole Desch, Philippe Goyette, Daniel Gudbjartsson, Ingileif Jonsdottir, Unnur Thorsteinsdottir, Frauke Degenhardt, Soren Mucha, Mitja I Kurki, Dalin Li, Mauro D'Amato, Vito Annese, Severine Vermeire, Rinse Weersma, Jonas Halfvarsson, Paulina Paavola-Sakki, Maarit Lappalainen, Monkol Lek, Beryl Cummings, Taru Tukianen, Talin Haritunians, Leena Halme, Lotta Koskinen, Ashwin Ananthakrishnan, Yang Luo, Graham A Heap, Marijn Visschedijk, NIDDK IBD Genetics Consortium, UK IBD Genetics Consortium, Daniel G MacArthur, Benjamin M Neale, Tariq Ahmad, Carl A Anderson, Steve
10.1101/035105 — Posted: 2015-12-23

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