Channel:  Johns Hopkins University

This collection includes bioRxiv and medRxiv papers from authors at Johns Hopkins University.

6060 Articles

Nanopore sequencing detects structural variants in cancer
Alexis L. Norris, Rachael E. Workman, Yunfan Fan, James R. Eshleman, Winston Timp
10.1101/028290 — Posted: 2015-10-04
Allele-specific expression reveals interactions between genetic variation and environment
David A Knowles, Joe R Davis, Anil Raj, Xiaowei Zhu, James B Potash, Myrna M Weissman, Jianxin Shi, Douglas F Levinson, Sara Mostafavi, Stephen B Montgomery, Alexis Battle
10.1101/025874 — Posted: 2015-09-13
Crucial Roles of the Arp2/3 Complex during Mammalian Corticogenesis
Pei-Shan Wang, Fu-Sheng Chou, Fengli Guo, Praveen Suraneni, Sheng Xia, Sree Ramachandran, Rong Li
10.1101/026161 — Posted: 2015-09-06
Cell-cell communication enhances the capacity of cell ensembles to sense shallow gradients during morphogenesis
David Ellison, Andrew Mugler, Matthew Brennan, Sung Hoon Lee, Robert Huebner, Eliah Shamir, Laura A Woo, Joseph Kim, Patrick Amar, Ilya Nemenman, Andrew J Ewald, Andre Levchenko
10.1101/025346 — Posted: 2015-08-23
Rail-RNA: Scalable analysis of RNA-seq splicing and coverage
Abhinav Nellore, Leonardo Collado-Torres, Andrew E Jaffe, José Alquicira-Hernández, Jacob Pritt, James Morton, Jeffrey T Leek, Ben Langmead
10.1101/019067 — Posted: 2015-08-12
Impact of the X chromosome and sex on regulatory variation
Kimberly R Kukurba, Princy Parsana, Kevin S Smith, Zachary Zappala, David A Knowles, Marie-Julie Favé, Xin Li, Xiaowei Zhu, James B Potash, Myrna M Weissman, Jianxin Shi, Anshul Kundaje, Douglas F Levinson, Philip Awadalla, Sara Mostafavi, Alexis Battle, Stephen B Montgomery
10.1101/024117 — Posted: 2015-08-07
Correspondence between resting state activity and brain gene expression
Guang-Zhong Wang, T. Grant Belgard, Deng Mao, Leslie Chen, Stefano Berto, Todd Preuss, Hanzhang Lu, Daniel Geschwind, Genevieve Konopka
10.1101/021071 — Posted: 2015-07-10
SubClonal Hierarchy Inference from Somatic Mutations: automatic reconstruction of cancer evolutionary trees from multi-region next generation sequencing
Noushin Niknafs, Violeta Beleva Guthrie, Daniel Q Naiman, Rachel Karchin
10.1101/011833 — Posted: 2015-07-01
PIK3CA Mutational Analysis in Formalin-Fixed, Paraffin-Embedded Archival Tissues of Urothelial Carcinoma of Urinary Bladder
Alcides Chaux, Julie S. Cohen, Luciana Schultz, Roula Albadine, Sana Jadallah, Kathleen M. Murphy, Diana Teheri, Mark P. Schoenberg, George J. Netto
10.1101/020263 — Posted: 2015-06-16
Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data
Jean-Philippe Fortin, Kasper D Hansen
10.1101/019000 — Posted: 2015-06-03

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