Channel: Johns Hopkins University

This collection includes bioRxiv and medRxiv papers from authors at Johns Hopkins University.

5654 Articles

Astrocyte redox dysregulation causes prefrontal hypoactivity: sulforaphane treats non-ictal pathophysiology in ALDH7A1-mediated epilepsy

Faust, T. E., Xin, W., Lee, B. J., Agarwal, A., Saha, S., Palen, T., Cash-Padgett, T., Wood, D., Bonci, A., Fahey, J. W., Jaaro-Peled, H., Bergles, D. E., Sawa, A.

10.1101/796474 — Posted: 2019-10-07

Vascular Progenitors Generated from Tankyrase Inhibitor-Regulated Naive Diabetic Induced Pluripotent Stem Cells Potentiate Efficient Revascularization of Ischemic Retina

Park, T. S., Zimmerlin, L., Evans-Moses, R., Thomas, J., Huo, J. S., Kanherkar, R., He, A., Ruzgar, N., Grebe, R., Bhutto, I., Lutty, G., Zambidis, E. T.

10.1101/678599 — Posted: 2019-10-07

Single-cell ATAC-seq Signal Extraction and Enhancement with SCATE

Ji, Z., Zhou, W., Ji, H.

10.1101/795609 — Posted: 2019-10-07

Mechanisms of tissue-specific genetic regulation revealed by latent factors across eQTLs

He, Y., Chhetri, S. B., Arvanitis, M., Srinivasan, K., Aguet, F., Ardlie, K. G., Barbeira, A. N., Bonazzola, R., Im, H. K., GTEx Consortium, , Brown, C. D., Battle, A.

10.1101/785584 — Posted: 2019-10-06

OpenCRAVAT, an open source collaborative platform for the annotation of human genetic variation

Pagel, K. A., Kim, R., Moad, K., Busby, B., Zheng, L., Hynes-Grace, M., Tokheim, C., Ryan, M., Karchin, R.

10.1101/794297 — Posted: 2019-10-06

High-throughput prediction of MHC Class I and Class II neoantigens with MHCnuggets

Shao, X. M., Bhattacharya, R., Huang, J., Sivakumar, I. K. A., Tokheim, C., Zheng, L., HIrsch, D., Kaminow, B., Omdahl, A., Bonsack, M., Riemer, A. B., Velculescu, V., Anagnostou, V., Pagel, K., Karchin, R.

10.1101/752469 — Posted: 2019-10-04

Long non-coding RNA gene regulation and trait associations across human tissues

de Goede, O. M., Ferraro, N. M., Nachun, D. C., Rao, A., Aguet, F., Barbeira, A. N., Castel, S. E., Kim-Hellmuth, S., Park, Y., Scott, A. J., Strober, B. J., GTEx Consortium, , Brown, C. D., Wen, X., Hall, I. M., Battle, A., Lappalainen, T., Im, H. K., Ardlie, K. G., Quertermous, T., Kirkegaard, K., Montgomery, S. B.

10.1101/793091 — Posted: 2019-10-04

Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses

Zhang, H., Ahearn, T., Lecarpentier, J., Barnes, D., Beesley, J., Qi, G., Jiang, X., O'Mara, T. A., Zhao, N., Bolla, M. K., Dunning, A. M., Dennis, J., Wang, Q., Abu Ful, Z., Aittomaki, K., Andrulis, I. L., Anton-Culver, H., Arndt, V., Aronson, K. J., Arun, B. K., Auer, P. L., Azzollini, J., Barrowdale, D., Becher, H., Beckmann, M. W., Behrens, S., Benitez, J., Bermisheva, M., Bialkowska, K., Blanco, A., Blomqvist, C., Bogdanova, N. V., Bojesen, S. E., Bonanni, B., Bondavalli, D., Borg, A., Brauch, H., Brenner, H., Briceno, I., Broeks, A., Brucker, S. Y., Bruning, T., Burwinkel, B., Buys, S.

10.1101/778605 — Posted: 2019-10-04

Diverse transcriptomic signatures across human tissues identify functional rare genetic variation

Ferraro, N. M., Strober, B. J., Einson, J., Li, X., Aguet, F., Barbeira, A. N., Castel, S. E., Davis, J. R., Hilliard, A. T., Kotis, B., Park, Y., Scott, A. J., Smail, C., Tsang, E. K., Ardlie, K. G., Assimes, T. L., Hall, I., Im, H. K., GTEx Consortium, , Lappalainen, T., Mohammadi, P., Montgomery, S. B., Battle, A.

10.1101/786053 — Posted: 2019-10-03

The GTEx Consortium atlas of genetic regulatory effects across human tissues

Aguet, F., Barbeira, A. N., Bonazzola, R., Brown, A., Castel, S. E., Jo, B., Kasela, S., Kim-Hellmuth, S., Liang, Y., Oliva, M., Parsana, P. E., Flynn, E., Fresard, L., Gaamzon, E. R., Hamel, A. R., He, Y., Hormozdiari, F., Mohammadi, P., Munoz-Aguirre, M., Park, Y., Saha, A., Segrc, A. V., Strober, B. J., Wen, X., Wucher, V., Das, S., Garrido-Martin, D., Gay, N. R., Handsaker, R. E., Hoffman, P. J., Kashin, S., Kwong, A., Li, X., MacArthur, D., Rouhana, J. M., Stephens, M., Todres, E., Vinuela, A., Wang, G., Zou, Y., The GTEx Consortium, , Brown, C. D., Cox, N., Dermitzakis, E., Engelhardt

10.1101/787903 — Posted: 2019-10-03

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