Channel: University of Chicago

This collection includes bioRxiv and medRxiv papers from authors at University of Chicago.

2708 Articles

Imputation of single-cell gene expression with an autoencoder neural network

Badsha, M. B., Li, R., Liu, B., Li, Y. I., Xian, M., Banovich, N. E., Fu, A. Q.

10.1101/504977 — Posted: 2019-11-09

Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx

Gay, N. R., Gloudemans, M., Antonio, M. L. L., Balliu, B., Park, Y., Martin, A. R., Musharoff, S., Rao, A., Aguet, F., Barbeira, A., Bonazzola, R., Hormozdiari, F., GTEx Consortium, , Ardlie, K. G., Brown, C. D., Im, H. K., Lappalainen, T., Wen, X., Montgomery, S. B.

10.1101/836825 — Posted: 2019-11-09

Pan-cancer image-based detection of clinically actionable genetic alterations

Kather, J. N., Heij, L. R., Grabsch, H. I., Kooreman, L. F., Loeffler, C., Echle, A., Krause, J., Muti, H. S., Niehues, J. M., Sommer, K. A., Bankhead, P., Schulte, J. J., Cipriani, N. A., Ortiz-Bruechle, N., Patnaik, A., Srisuwananukorn, A., Brenner, H., Hoffmeister, M., Van den Brandt, P. A., Jaeger, D., Trautwein, C., Pearson, A. T., Luedde, T.

10.1101/833756 — Posted: 2019-11-08

Bayesian Modeling Reveals Ultrasensitivity Underlying Metabolic Compensation in the Cyanobacterial Circadian Clock

Hong, L., Lavrentovich, D. O., Chavan, A., Leypunskiy, E., Li, E., Matthews, C., LiWang, A., Rust, M. J., Dinner, A. R.

10.1101/835280 — Posted: 2019-11-08

Modeling adaptive therapy in non-muscle invasive bladder cancer

Ferrall-Fairbanks, M. C., Kimmel, G. J., Black, M., Bravo, R., Deac, O., Martinez, P., Myers, M., Nazari, F., Osojnik, A., Subramanian, H., Viossat, Y., Whiting, F., Li, R., Mann, K. M., Altrock, P. M.

10.1101/826438 — Posted: 2019-11-07

DRAMS: A Tool to Detect and Re-Align Mixed-up Samples for Integrative Studies of Multi-omics Data

Jiang, Y., Giase, G., Grennan, K., Shieh, A. W., Xia, Y., Han, L., Wang, Q., Wei, Q., Chen, R., Liu, S., White, K. P., Chen, C., Li, B., Liu, C.

10.1101/831537 — Posted: 2019-11-06

RNA-binding protein altered expression and mislocalization in multiple sclerosis

Masaki, K., Sonobe, Y., Ghadge, G., Pytel, P., Lepine, P., Pernin, F., Cui, Q.-L., Antel, J. P., Zandee, S., Prat, A., Roos, R. P.

10.1101/829457 — Posted: 2019-11-05

Variation in the life history strategy of cells underlies tumor’s functional diversity

Lu, X., Li, T., Liu, J., Feng, J., Liu, Z., Liu, S., Zhang, M., Zhang, Y., Hou, Y., Wu, D., Li, C., Chen, Y.-B., Wu, C.-I., Chen, H.

10.1101/829135 — Posted: 2019-11-04

Disinfection exhibits systematic impacts on the drinking water microbiome.

Dai, Z., Sevillano, M. C., Calus, S. T., Bautista-de los Santos, Q. M., Eren, A. M., van der Wielen, P. W. J. J., Ijaz, U. Z., Pinto, A. J.

10.1101/828970 — Posted: 2019-11-02

Allele-specific open chromatin in human iPSC neurons elucidates functional non-coding disease variants

Zhang, S., Zhang, H., Qiao, M., Zhou, Y., Zhao, S., Kozlova, A., Shi, J., Sanders, A. R., Wang, G., Sengupta, S., West, S., Streit, M., Cowan, C. A., Chen, M., Pang, Z., Gejman, P. V., He, X., Duan, J.

10.1101/827048 — Posted: 2019-11-01

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