Channel: University of California, San Diego

This collection includes bioRxiv and medRxiv papers from authors at University of California, San Diego.

4092 Articles

The complete sequence of a human Y chromosome

Rhie, A., Nurk, S., Cechova, M., Hoyt, S. J., Taylor, D. J., Altemose, N., Hook, P. W., Koren, S., Rautiainen, M., Alexandrov, I. A., Allen, J., Asri, M., Bzikadze, A. V., Chen, N.-C., Chin, C.-S., Diekhans, M., Flicek, P., Formenti, G., Fungtammasan, A., Garcia Giron, C., Garrison, E., Gershman, A., Gerton, J., Grady, P. G., Guarracino, A., Haggerty, L., Halabian, R., Hansen, N. F., Harris, R., Hartley, G. A., Harvey, W. T., Haukness, M., Heinz, J., Hourlier, T., Hubley, R. M., Hunt, S. E., Hwang, S., Jain, M., Kesharwani, R. K., Lewis, A. P., Li, H., Logsdon, G. A., Lucas, J. K., Makalowski

10.1101/2022.12.01.518724 — Posted: 2023-07-11

Assigning mutational signatures to individual samples and individual somatic mutations with SigProfilerAssignment

Diaz-Gay, M., Vangara, R., Barnes, M., Wang, X., Islam, S. M. A., Vermes, I., Narasimman, N. B., Yang, T., Jiang, Z., Moody, S., Senkin, S., Brennan, P., Stratton, M., Alexandrov, L. B.

10.1101/2023.07.10.548264 — Posted: 2023-07-11

Handling difficult cryo-ET samples: A study with primary neurons from Drosophila melanogaster

Kim, J. Y., Yang, J. E., Mitchell, J. W., English, L. A., Yang, S. Z., Tenpas, T., Dent, E. W., Wildonger, J., Wright, E. R.

10.1101/2023.07.10.548468 — Posted: 2023-07-11

Correlates of Risk for Disinhibited Behaviors in the Million Veteran Program Cohort

Barr, P. B., Bigdeli, T. B., Meyers, J. L., Peterson, R. E., Sanchez-Roige, S., Mallard, T. T., Dick, D. M., Harden, K. P., Wilkinson, A., Graham, D. P., Nielsen, D. A., Swann, A., Lipsky, R. K., Kosten, T., Aslan, M., Cooperative Studies Program (CSP) #572, , Million Veteran Program, , Harvey, P. D., Kimbrel, N. A., Beckham, J. C.

10.1101/2023.03.22.23286865 — Posted: 2023-07-11

Hypoxic memory of tumor intrinsic type I interferon suppression promotes breast cancer metastasis

Iriondo, O., Mecenas, D., Li, Y., Chin, C. R., Thomas, A., Amzaleg, Y., Moriarty, A., Ortiz, V., MacKay, M., Dickerson, A., Lee, G., Harotoonian, S., Benayoun, B. A., Smith, A. D., Mason, C., Roussos Torres, E., Klotz, R., Yu, M.

10.1101/2022.05.12.491632 — Posted: 2023-07-09

Multi-ancestry genome-wide meta-analysis of 56,241 individuals identifies LRRC4C, LHX5-AS1 and nominates ancestry-specific loci PTPRK, GRB14, and KIAA0825 as novel risk loci for Alzheimer disease: the Alzheimer Disease Genetics Consortium

Rajabli, F., Benchek, P., Tosto, G., Kushch, N., Sha, J., Bazemore, K., Zhu, C., Lee, W.-P., Haut, J., Hamilton-Nelson, K. L., Wheeler, N. R., Zhao, Y., Farrell, J. J., Grunin, M. A., Leung, Y. Y., Kuksa, P. P., Li, D., Lucio da Fonseca, E., Mez, J. B., Palmer, E. L., Pillai, J., Sherva, R. M., Song, Y. E., Zhang, X., Iqbal, T., Pathak, O., Valladares, O., Kuzma, A. B., Abner, E., Adams, P. M., Aguirre, A., Albert, M. S., Albin, R. L., Allen, M., Alvarez, L., Apostolova, L. G., Arnold, S. E., Asthana, S., Atwood, C. S., Ayres, G., Baldwin, C. T., Barber, R. C., Barnes, L. L., Barral, S., Beach

10.1101/2023.07.06.23292311 — Posted: 2023-07-08

Epigenetic Germline Variants Predict Cancer Prognosis and Risk and Distribute Uniquely in Topologically Associating Domains

Goudarzi, S., Pagadala, M., Klie, A., Talwar, J., Carter, H.

10.1101/2023.07.04.547722 — Posted: 2023-07-07

A conserved antigen induces respiratory Th17-mediated serotype-independent protection against pneumococcal superinfection

Liu, X., Van Maele, L., Matarazzo, L., Soulard, D., Alves Duarte da Silva, V., de Bakker, V., Denereaz, J., Bock, F. P., Taschner, M., Gruber, S., Nizet, V., Sirard, J.-C., Veening, J.-W.

10.1101/2023.07.07.548156 — Posted: 2023-07-07

Enhanced cellular longevity arising from environmental fluctuations

Liu, Y., Zhou, Z., Wu, S., Ni, G., Zhang, A., Tsimring, L. S., Hasty, J., Hao, N.

10.1101/2023.07.05.547867 — Posted: 2023-07-07

Dimensional and Categorical Solutions to Parsing Depression Heterogeneity in a Large Single-Site Sample

Dunlop, K., Grosenick, L., Downar, J., Vila-Rodriguez, F., Gunning, F. M., Daskalakis, Z., Blumberger, D. M., Liston, C.

10.1101/2023.07.05.547873 — Posted: 2023-07-07

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