Channel: University of California, San Diego

This collection includes bioRxiv and medRxiv papers from authors at University of California, San Diego.

4057 Articles

Characterizing concentration-dependent neural dynamics of 4-aminopyridine-induced epileptiform activity

Myers, T. L., Gonzalez, O. C., Stein, J. B., Bazhenov, M.

10.1101/252726 — Posted: 2018-01-24

Complete avian malaria parasite genomes reveal features associated with lineage specific evolution in birds and mammals

Boehme, U., Otto, T. D., Cotton, J., Steinbiss, S., Sanders, M., Oyola, S. O., Nicot, A., Gandon, S., Patra, K. P., Herd, C., Bushell, E., Modrzynska, K. K., Billker, O., Vinetz, J. M., Rivero, A., Newbold, C. I., Berriman, M.

10.1101/086504 — Posted: 2018-01-18

Fast and Flexible GPU Accelerated Binding Free Energy Calculations within the AMBER Molecular Dynamics Package

Mermelstein, D. J., Lin, C., Nelson, G., Kretsch, R., McCammon, J. A., Walker, R. C.

10.1101/247692 — Posted: 2018-01-15

Assembly of Long Error-Prone Reads Using Repeat Graphs

Kolmogorov, M., Yuan, J., Lin, Y., Pevzner, P.

10.1101/247148 — Posted: 2018-01-12

Splice Expression Variation Analysis (SEVA) for Inter-tumor Heterogeneity of Gene Isoform Usage in Cancer

Afsari, B., Guo, T., Considine, M., Florea, L., Tsukamoto Kagohara, L., Stein-O'Brien, G. L., Kelley, D., Flam, E., Zambo, K. D., Ha, P., Geman, D., Ochs, M. F., Califano, J. A., Gaykalova, D. A., Favorov, A. V., Fertig, E. J.

10.1101/091637 — Posted: 2018-01-11

Exploring protein orthogonality in immune space: a case study with AAV and Cas9 orthologs

Moreno, A. M., Palmer, N., Aleman, F., Chen, G., Pla, A., Chew, W. L., Law, M., Mali, P.

10.1101/245985 — Posted: 2018-01-10

Genome-wide association analysis of lifetime cannabis use (N=184,765) identifies new risk loci, genetic overlap with mental health, and a causal influence of schizophrenia on cannabis use

Pasman, J. A., Verweij, K. J. H., Gerring, Z., Stringer, S., Sanchez-Roige, S., Treur, J. L., Abdellaoui, A., Nivard, M. G., Baselmans, B. M. L., Ong, J.-S., Ip, H. F., van der Zee, M. D., Bartels, M., Day, F. R., Fontanillas, P., Elson, S. L., the 23andMe Research Team, , de Wit, H., Davis, L. K., MacKillop, J., International Cannabis Consortium, , Derringer, J. L., Branje, S. J. T., Hartman, C. A., Heath, A. C., van Lier, P. A. C., Madden, P. A. F., Magi, R., Meeus, W., Montgomery, G. W., Oldehinkel, A. J., Pausova, Z., Ramos-Quiroga, J. A., Paus, T., Ribases, M., Kaprio, J., Boks, M. P. M

10.1101/234294 — Posted: 2018-01-08

BOFdat: generating biomass objective function stoichiometric coefficients from experimental data

Lachance, J.-C., Monk, J. M., Lloyd, C. J., Seif, Y., Palsson, B. O., Rodrigue, S., Feist, A. M., King, Z. A., Jacques, P.-E.

10.1101/243881 — Posted: 2018-01-05

Generalizing Genetic Risk Scores from Europeans to Hispanics/Latinos

Grinde, K. E., Qi, Q., Thornton, T. A., Liu, S., Shadyab, A. H., Chan, K. H. K., Reiner, A. P., Sofer, T.

10.1101/242404 — Posted: 2018-01-04

Ligand-regulated entry into the HRD ERAD pathway--the dark side of allostery

Wangeline, M. A., Hampton, R. Y.

10.1101/177311 — Posted: 2018-01-03

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