Channel: University of California, San Diego

This collection includes bioRxiv and medRxiv papers from authors at University of California, San Diego.

4916 Articles

Sensitive alignment using paralogous sequence variants improves long read mapping and variant calling in segmental duplications

Prodanov, T., Bansal, V.

10.1101/2020.07.15.202929 — Posted: 2020-07-16

Consensus transcriptional regulatory networks of coronavirus-infected human cells

Ochsner, S. A., Pillich, R. T., McKenna, N.

10.1101/2020.04.24.059527 — Posted: 2020-07-15

Acidosis, Zinc and HMGB1 in Sepsis: A Common Connection Involving Sialoglycan Recognition

Siddiqui, S. S., Dhar, C., Sundaramurthy, V., Sasmal, A., Yu, H., Bandala-Sanchez, E., Li, M., Zhang, X., Chen, X., Harrison, L. C., Xu, D., Varki, A.

10.1101/2020.07.15.198010 — Posted: 2020-07-15

Conformation and dynamics of the kinase domain drive subcellular location and activation of LRRK2

Schmidt, S. H., Weng, J.-H., Aoto, P. C., Boassa, D., Mathea, S., Silletti, S., Hu, J., Wallbott, M., Komives, E. A., Knapp, S., Herberg, F. W., Taylor, S. S.

10.1101/2020.07.13.198069 — Posted: 2020-07-14

SARS-CoV-2 Infection Depends on Cellular Heparan Sulfate and ACE2

Clausen, T. M., Sandoval, D. R., Spliid, C. B., Pihl, J., Painter, C. D., Thacker, B. E., Glass, C. A., Narayanan, A., Majowicz, S. A., Zhang, Y., Torres, J. L., Golden, G. J., Porell, R., Garretson, A. F., Laubach, L., Feldman, J., Yin, X., Pu, Y., Hauser, B., Caradonna, T. M., Kellman, B. P., Martino, C., Gordts, P. L. S. M., Leibel, S. L., Chanda, S. K., Schmidt, A. G., Godula, K., Jose, J., Corbett, K. D., Ward, A. B., Carlin, A. F., Esko, J. D.

10.1101/2020.07.14.201616 — Posted: 2020-07-14

Mutational profiling of micro-dissected pre-malignant lesions from archived specimens

Nachmanson, D., Steward, J., Yao, H., Officer, A., Jeong, E., O'Keefe, T. J., Hasteh, F., Jepsen, K., Hirst, G. L., Esserman, L. J., Borowsky, A. D., Harismendy, O.

10.1101/2020.04.05.026708 — Posted: 2020-07-13

Tobacco, but not nicotine and flavor-less electronic cigarettes, induces ACE2 and immune dysregulation

Lee, A. C., Chakladar, J., Li, W. T., Chen, C., Chang, E. Y., Wang-Rodriguez, J., Ongkeko, W. M.

10.1101/2020.07.13.198630 — Posted: 2020-07-13

Cigarette Smoke and Nicotine-Containing E-cigarette Vapor Downregulate Lung WWOX Expression Which is Associated with Increased Severity of Murine ARDS

Zeng, Z., Chen, W., Moshensky, A., Khan, R., Alexander, L. C., Ware, L. B., Aldaz, C. M., Jacobson, J. R., Dudek, S. M., Natarajan, V., Machado, R. F., Singla, S.

10.1101/2020.07.13.200832 — Posted: 2020-07-13

Reference data based insights expand understanding of human metabolomes

Julia M Gauglitz, Wout Bittremieux, Candace L Williams, Kelly C Weldon, Morgan W Panitchpakdi, Francesca Di Ottavio, Christine M Aceves, Elizabeth Brown, Nicole C Sikora, Alan K. Jarmusch, Cameron Martino, Anupriya Tripathi, Erfan Sayyari, Justin Shaffer, Roxana Coras, Fernando Vargas, Lindsay DeRight Goldasich, Tara Schwartz, MacKenzie Bryant, Gregory Humphrey, Abigail J. Johnson, Katharina Spengler, Pedro Belda-Ferre, Edgar Diaz, Daniel McDonald, Qiyun Zhu, Dominic S. Nguyen, Emmanuel O. Elijah, Mingxun Wang, Clarisse Marotz, Kate E. Sprecher, Daniela Vargas-Robles, Dana Withrow, Gail Ackerm

10.1101/2020.07.08.194159 — Posted: 2020-07-11

Commercial Serology Assays Predict Neutralization Activity Against SARS-CoV-2

Suhandynata, R. T., Hoffman, M. A., Huang, D., Tran, J. T., Kelner, M. J., Reed, S. L., McLawhon, R. W., Voss, J. E., Nemazee, D., Fitzgerald, R.

10.1101/2020.07.10.20150946 — Posted: 2020-07-11

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