Channel: Fred Hutchinson Cancer Center

This collection includes bioRxiv and medRxiv papers from authors at Fred Hutchinson Cancer Center.

1137 Articles

Fine-scale spatial and social patterns of SARS-CoV-2 transmission from identical pathogen sequences

Tran-Kiem, C., Paredes, M. I., Perofsky, A. C., Frisbie, L. A., Xie, H., Kong, K., Weixler, A., Greninger, A. L., Roychoudhury, P., Peterson, J. M., Delgado, A., Holstead, H., MacKellar, D., Dykema, P., Gamboa, L., Frazar, C. D., Ryke, E., Stone, J., Reinhart, D., Starita, L., Thibodeau, A., Yun, C., Aragona, F., Black, A., Viboud, C., Bedford, T.

10.1101/2024.05.24.24307811 — Posted: 2024-11-07

Antigen-Specific T Cell Receptor Discovery for Treating Progressive Multifocal Leukoencephalopathy

Gupta, S., Martinov, T., Thelen, A., Sunahara, M., Mureli, S., Vazquez, A., Gerdts, J., Dandekar, R., Cortese, I., Fouassier, C., Schanzer, E., Urnov, F. D., Marson, A., Shy, B. R., Greenberg, P. D., Wilson, M. R.

10.1101/2024.11.04.621904 — Posted: 2024-11-04

An Integrated Germline and Somatic Genomic Model Improves Risk Prediction for Coronary Artery Disease

Yang, X., Yang, X., Kim, M. S., Kim, M. S., Zhu, X., Zhu, X., Zhu, X., Uddin, M. M., Uddin, M. M., Nakao, T., Nakao, T., Nakao, T., Nakao, T., Cho, S. M. J., Cho, S. M. J., Koyama, S., Koyama, S., Xu, T., Xu, T., Xu, T., Reeskamp, L. F., Reeskamp, L. F., Reeskamp, L. F., Zhang, R., Zhang, R., Liu, Z., Liu, Z., Liu, Z., A, Y., A, Y., A, Y., Vries, P. S. d., Vasan, R. S., Vasan, R. S., Boerwinkle, E., Morrison, A. C., Psaty, B. M., Psaty, B. M., Psaty, B. M., Tracy, R. P., Tracy, R. P., Heckbert, S. R., Silverman, E. K., Silverman, E. K., Cho, M. H., Cho, M. H., Yun, J. H., Yun, J. H., Palmer, N

10.1101/2024.11.01.24316612 — Posted: 2024-11-04

Microdissected tumor cuboids: a microscale cancer model for large-scale testing that retains a complex tumor microenvironment

Horowitz, L. F., Rodriguez-Mias, R. A., Chang, M., Zhu, S., Gottshall, N. R., Stepanov, I., Stiles, C., Yeung, M., Nguyen, T. N., Lockhart, E. J., Yeung, R. S., Villen, J., Gujral, T. S., Folch, A.

10.1101/2024.03.22.586189 — Posted: 2024-11-01

Human Plasma Proteomic Profile of Clonal Hematopoiesis

Yu, Z., Vromman, A., Nguyen, N. Q. H., Schuermans, A., Rentz, T., Vellarikkal, S. K., Uddin, M. M., Niroula, A., Griffin, G., Honigberg, M. C., Lin, A. E., Gibson, C. J., Katz, D. H., Tahir, U., Fang, S., Haidermota, S., Ganesh, S., Antoine, T., Weinstock, J., Austin, T. R., Vasan, R. S., peloso, G. M., Hornsby, W., Ganz, P., Manson, J. E., Haring, B., Kooperberg, C. L., Reiner, A. P., Bis, J. C., Psaty, B. M., Min, Y.-I., Correa, A., Lange, L. A., Post, W., Rotter, J. I., Rich, S. S., Wilson, J. G., Ebert, B. L., Yu, B., Ballantyne, C. M., Coresh, J., Sankaran, V. G., Bick, A. G., Jaiswal, S.

10.1101/2023.07.25.550557 — Posted: 2024-10-31

Sir2 and Fun30 regulate ribosomal DNA replication timing via Mcm helicase positioning and nucleosome occupancy

Lichauco, C., Foss, E. J., Gatbonton-Schwager, T., Athow, N. F., Lofts, B., Acob, R., Taylor, E., Marquez, J. J., Lao, U., Miles, s., Bedalov, A.

10.1101/2024.03.21.586113 — Posted: 2024-10-28

Long-term hybridization in a karst window reveals the genetic basis of eye loss in cavefish

Kellermeyer, R., Seidel, C., Redwine, W. B., Moran, R. L., Bertho, S., Ornelas-Garcia, C. P., Alegre, D., Weaver, K. J., Unruh, J., Troutwine, B., Wang, Y., Collins, E., Rutkowski, J., McGaugh, S. E., Espinasa, L., Rohner, N.

10.1101/2024.10.25.620266 — Posted: 2024-10-28

An integrated view of the structure and function of the human 4D nucleome

The 4D Nucleome Consortium, , Dekker, J., Oksuz, B. A., Zhang, Y., Wang, Y., Minsk, M. K., Kuang, S., Yang, L., Gibcus, J. H., Krietenstein, N., Rando, O., Xu, J., Janssens, D. H., Henikoff, S., Kukalev, A., Willemin, A., Winick-Ng, W., Kempfer, R., Pombo, A., Yu, M., Kumar, P., Zhang, L., Belmont, A. S., Sasaki, T., van Schaik, T., Brueckner, L., Peric-Hupkes, D., van Steensel, B., Wang, P., Chai, H., Kim, M., Ruan, Y., Zhang, R., Quinodoz, S. A., Bhat, P., Guttman, M., Zhao, W., Chien, S., Liu, Y., Venev, S. V., Plewczynski, D., Irastorza Azcarate, I., Szabo, D., Thieme, C. J., Szczepinska

10.1101/2024.09.17.613111 — Posted: 2024-10-27

Predicting the 10-year risk of cardiomyopathy in long-term survivors of childhood cancer: a report from the St. Jude Lifetime Cohort and the Childhood Cancer Survivor Study

Petrykey, K., Chen, Y., Neupane, A., French, J., Wang, H., Xiang, H., Dixon, S. B., Vukadinovich, C., Im, C., Ehrhardt, M. J., Mulrooney, D. A., Sharafeldin, N., Wang, X., Howell, R. M., Jefferies, J. L., Burridge, P. W., Oeffinger, K. C., Gramatges, M. M., Bhatia, S., Robison, L. L., Ness, K. K., Hudson, M. M., Chow, E. J., Armstrong, G. T., Yasui, Y., Sapkota, Y.

10.1101/2024.10.24.24316064 — Posted: 2024-10-25

Assessing how women access healthcare to inform cervical cancer and HIV screening in rural Uganda.

Sheehan, M., Dau, H., AboMoslim, M., Naguti, P., Mwandacha, N., Booth, A., Ruck, C., Smith, L., Orem, J., Ogilvie, G., Nakisige, C.

10.1101/2024.10.22.24315934 — Posted: 2024-10-23

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