Channel: Cold Spring Harbor Laboratory

This collection includes bioRxiv and medRxiv papers from authors at Cold Spring Harbor Laboratory.

670 Articles

Improving replicability in single-cell RNA-Seq cell type discovery with Dune

Roux de Bezieux, H., Street, K., Fischer, S., Van den Berge, K., Chance, R., Risso, D., Gillis, J., Ngai, J., Purdom, E., Dudoit, S.

10.1101/2020.03.03.974220 — Posted: 2020-03-30

Top-down coordination of local cortical state during selective attention

van Kempen, J., Gieselmann, M. A., Boyd, M., Steinmetz, N. A., Moore, T., Engel, T., Thiele, A.

10.1101/2020.03.26.009365 — Posted: 2020-03-26

Detection and skeletonization of single neurons and tracer injections using topological methods

Wang, D., Magee, L., Huo, B.-X., Banerjee, S., Li, X., Jayakumar, J., Lin, M. K., Ram, K., Wang, S., Wang, Y., Mitra, P. P.

10.1101/2020.03.21.000323 — Posted: 2020-03-22

HflX controls hypoxia-induced non-replicating persistence in slow growing mycobacteria

NGAN, J. Y. G., PASUNOOTI, S., TSE, W., MENG, W., NGAN, S. F. C., NG, S. W., JAAFAR, M. T., JIA, H., CHO, S. L. S., LIM, J., KOH, H. Q. V., ABDULGHANI, N., PETHE, K., Sze, K. S., Lescar, J., Alonso, S.

10.1101/2020.03.13.990168 — Posted: 2020-03-15

A limited set of transcriptional programs define major cell types

Breschi, A., Munoz-Aguirre, M., Wucher, V., Davis, C. A., Garrido-Martin, D., Djebali, S., Gillis, J., Pervouchine, D. D., Vlasova, A., Dobin, A., Zaleski, C., Drenkow, J., Danyko, C., Scavelli, A., Reverter, F., Snyder, M. P., Gingeras, T. R., Guigo, R.

10.1101/857169 — Posted: 2020-03-11

Dissecting cell type-specific metabolism in pancreatic ductal adenocarcinoma

Lau, A. N., Li, Z., Danai, L. V., Westermark, A. M., Darnell, A. M., Ferreira, R., Gocheva, V., Sivanand, S., Lien, E. C., Sapp, K. M., Mayers, J. R., Biffi, G., Chin, C. R., Davidson, S. M., Tuveson, D. A., Jacks, T., Matheson, N. J., Yilmaz, O. H., Vander Heiden, M.

10.1101/2020.03.09.984237 — Posted: 2020-03-10

Methods for Running a Successful Women-in-STEM Organization on an Academic Campus

Rupert, D., Nowlan, A. C., Tam, O. H., Gale Hammell, M.

10.1101/2020.02.20.958629 — Posted: 2020-03-07

Choices Change the Temporal Weighting of Decision Evidence

Talluri, B. C., Urai, A. E., Bronfman, Z. Z., Brezis, N., Tsetsos, K., Usher, M., Donner, T. H.

10.1101/2020.03.06.979690 — Posted: 2020-03-06

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

Yao, Z., Liu, H., Xie, F., Fischer, S., Adkins, R. S., Aldrige, A. I., Ament, S. A., Bartlett, A., Behrens, M. M., Van den Berge, K., Bertagnolli, D., Biancalani, T., Booeshaghi, A. S., Corrada Bravo, H., Casper, T., Colantuoni, C., Crabtree, J., Creasy, H., Crichton, K., Crow, M., Dee, N., Dougherty, E. L., Doyle, W. I., Dudoit, S., Fang, R., Felix, V., Fong, O., Giglio, M., Goldy, J., Hawrylycz, M., Bezieux, H. R. d., Herb, B. R., Hertzano, R., Hou, X., Hu, Q., Huang, Z. J., Kancherla, J., Kroll, M., Lathia, K., Li, Y. E., Lucero, J. D., Luo, C., Mahurkar, A., McMillen, D., Nadaf, N. M., Ner

10.1101/2020.02.29.970558 — Posted: 2020-03-05

Arabidopsis LTR retrotransposons and their regulation by epigenetically activated small RNA

Lee, S. C., Ernst, E., Berube, B., Borges, F., Parent, J.-S., Ledon, P., Schorn, A., Martienssen, R. A.

10.1101/2020.01.24.919167 — Posted: 2020-02-27

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