Channel: University of California, Berkeley

This collection includes bioRxiv and medRxiv papers from authors at University of California, Berkeley.

4959 Articles

Enabling the prediction of phage receptor specificity from genome data

Moriniere, L., Noonan, A. J. C., Kazakov, A., Pena, M., Svab, M., Rivera-Lopez, E. O., Maucourt, F., Johnson, M. S., Roux, S., Koskella, B., Deutschbauer, A. M., Dudley, E. G., Mutalik, V. K., Arkin, A. P.

10.64898/2026.04.02.716166 — Posted: 2026-04-19

Calibration of in-frame indel variant effect predictors for clinical variant classification

Abderrazzaq, H., Singh, M., Babb, L., Bergquist, T., Brenner, S. E., Pejaver, V., O'Donnell-Luria, A., Radivojac, P., ClinGen Computational Working Group, , ClinGen Variant Classification Working Group

10.64898/2026.04.15.718599 — Posted: 2026-04-18

Co-occurrence networks can preserve emergent properties of ecological communities

Callahan, F. M., Evensen, C.

10.64898/2026.04.15.718781 — Posted: 2026-04-17

Functional Genomics Reveals TNT Bioremediation Strategies in Pantoea sp. MT58 and Pseudomonas putida KT2440

Wang, L.-W., Eng, T., Rivier, A., Naseem, S., Codik, A., Chen, Y., Srinivasan, A., Petzold, C. J., Nelson, K. L., Deutschbauer, A. M., Mukhopadhyay, A.

10.64898/2026.04.16.711451 — Posted: 2026-04-17

Apical Localization of RNA Polymerases Modulates Transcription Dynamics and Supercoiling Domains Revealed by Cryo-ET

Zhang, M., Canari-Chumpitaz, C., Liu, J., Onoa, B., de Cleir, S., Cheng, E., Requejo, K. I., Bustamante, C.

10.64898/2026.03.25.714350 — Posted: 2026-04-16

Federated single-cell QTL meta-analysis reveals novel disease mechanisms

Kaptijn, D., Michielsen, L., Neavin, D., Ripoll-Cladellas, A., Alquicira-Hernandez, J. E., Korshevniuk, M., Lee, J. T. H., Oelen, R., Vochteloo, M., Warmerdam, R., Ando, Y., Ban, M., Bayaraa, O., Berg, M., van Blokland, I., Considine, D., Dieng, M. M., Edahiro, R., Gordon, M. G., Groot, H. E., van der Harst, P., Heinig, M., Hon, C.-C., Idaghdour, Y., Kathail, P., de Klein, N., Li, W., Li, Y., Losert, C., Manikanda, V., Moody, J., Naeem, H., Mokrab, Y., Nawijn, M. C., Netea, M., Niewold, J., Okada, Y., Sawcer, S., Soulama, I., Stegle, O., Tsepilov, Y., Park, W.-Y., Rajagopalan, D., Shahin, T.

10.64898/2026.01.20.700519 — Posted: 2026-04-14

Single-Molecule Methods to Investigate Mechanisms of Transcription by RNA Polymerase of Mycobacterium tuberculosis

Lin, W., Herrera-Asmat, O., Tong, A. B., Kong, T., Bustamante, C.

10.64898/2026.03.27.714832 — Posted: 2026-04-14

Constitutive Androstane Receptor induces Ribonucleotide Reductase-M2 expression and maintains hepatocyte ploidy in mice

Asokakumar, A., Mathur, B., Chorghade, S., Chou, A., Cronologia, B., Alencastro, F., Wheeler, L., Mathews, C. K., Moore, D. D., Duncan, A. W., Anakk, S.

10.1101/2025.04.29.651109 — Posted: 2026-04-11

Gut microbiome-dependent IL-1 signaling is a mediator of ACVR1R206H-driven heterotopic ossification

Herzog, H. M., Fang, C., Lam, L., Jin, K., Zamarioli, A., Dinh, E., Gupta, C. L., Sharma, A., Moody, T., Pierce, J. L., Hohl, M. S., Takimoto, S. W., Lyalina, S., Wentworth, K. L., Yu, K., Lu, V. F., Isadora Mamikunian, I., Hunt, N. K., Lynch, S., Pollard, K. S., Hernandez, C. J., Perrien, D. S., Hsiao, E. C.

10.64898/2026.04.05.716562 — Posted: 2026-04-08

Decoding concept representations in aphasia after stroke

Tang, J., Millanski, C., Chen, A., Wauters, L. D., Anders, J., Shamapant, S., Wilson, S. M., Huth, A. G., Henry, M.

10.64898/2026.04.07.717076 — Posted: 2026-04-08

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