Channel: University of California, San Francisco

This collection includes bioRxiv and medRxiv papers from authors at University of California, San Francisco.

3188 Articles

Benchmarking Large Language Models for Predictive Modeling in Biomedical Research With a Focus on Reproductive Health

Sarwal, R., Tarca, V., Kalavros, N., Bhatti, G., Bhattacharya, S., Butte, A. J., Romero, R. J., Stolovitzky, G., Oskotsky, T. T., Tarca, A. L., Sirota, M.

10.1101/2025.07.07.663529 — Posted: 2025-07-10

Clinical and molecular characterisation of primary refractoriness to atezolizumab plus bevacizumab in patients with unresectable hepatocellular carcinoma.

Lombardi, P., Ramon-Gil, E., Brunetti, L., Manfredi, G. F., Merces, G., Fulgenzi, C. A. M., DAlessio, A., Torkpour, A., Celsa, C., Stefanini, B., Yang, H., Crowley, F., Marron, T. U., Saeed, A., Pinter, M., Scheiner, B., Huang, Y.-H., Lee, P.-C., Nishida, N., Po-Ting Lin, R., Dalbeni, A., Vivaldi, C., Masi, G., Rohlen, N., von Felden, J., Kaseb, A., Galle, P. R., Kudo, M., Hsu, W.-F., Rimassa, L., Parisi, A., Kelley, R. K., Toyoda, H., Pirisi, M., Jabar, R. F., Rakaee, M., Cabibbo, G., Camma, C., Piscaglia, F., Hwang, S., Shin, D. J., Li, M., Daniele, G., Mann, D., Chon, H. J., Leslie, J., Pin

10.1101/2025.07.08.663653 — Posted: 2025-07-10

Tongue Swab Xpert MTB/RIF Ultra Testing for Tuberculosis Using a Revised Consensus Protocol: A multi-country diagnostic accuracy study

Aijde, B., Moe, C. A., Barrameda, J., Chirwa, M., Rockman, L., de Haas, P., de Vos, M., Kato-Maeda, M., Tasca, B., Bimba, J., Yu, C., Denkinger, C., Kremer, K., Nahid, P., Cattamanchi, A., Theron, G., Muyoyeta, M.

10.1101/2025.07.08.25330424 — Posted: 2025-07-10

Genome editing of phylogenetically distinct bacteria using portable retron-mediated recombineering

Gonzalez-Delgado, A., Bonillo-Lopez, L., Johnson, M. S., Knoedlseder, N., Ko, C.-C., Lekbach, Y., Oh, J.-H., Selvakumar, H., Wold, M. C., Yu, Z., Aragon, V., Gralnick, J. A., Guell, M., Hatfull, G., Keitz, B. K., Koskella, B., Mutalik, V. K., van Pijkeren, J. P., Shipman, S.

10.1101/2025.06.16.660010 — Posted: 2025-07-09

Blocking Osteoprotegerin Reprograms Cancer Associated Fibroblast to Promotes Immune Infiltration into the Tumor Microenvironment

Wang, Y., Apostolopoulou, H., Sun, I. H., Bains, A., Gibbs, D., Huang, S., Alliston, T., Maker, A., Tlsty, T., Ntranos, V., Gardner, J. M., Bhushan, A.

10.1101/2025.07.04.663190 — Posted: 2025-07-07

Beating the gold standard: A review of Mycobacterium tuberculosis lysis using bead beating and the need for standardization.

Limberis, J. D., Metcalfe, J. Z.

10.1101/2025.07.07.663234 — Posted: 2025-07-07

Programmable kinetic barcoding for multiplexed RNA detection with Cas13a

Son, S., Lyden, A., Pitti, C. N., Dextre, A., Shu, J., Stephens, S. I., Fozouni, P., Knott, G. J., Smock, D. C., Liu, T. Y., Boehm, D., Simoneau, C., Kumar, R. G., Doudna, J. A., Ott, M., Fletcher, D. A.

10.1101/2025.07.03.25328829 — Posted: 2025-07-06

Product-stabilized filamentation by human glutamine synthetase allosterically tunes metabolic activity

Greene, E., Muniz, R., Yamamura, H., Hoff, S. E., Bajaj, P., Lee, D. J., Thompson, E. M., Arada, A., Lee, G. M., Bonomi, M., Kollman, J. M., Fraser, J. S.

10.1101/2025.07.04.663231 — Posted: 2025-07-06

Exploring Heterogeneity in Treatment Effects: The Impact and Interaction of Asset-Based Wealth and Mass Azithromycin Distribution on Child Mortality

Gebreegziabher, E., Sie, A., Ouattara, M., Bountogo, M., Coulibaly, B., Boudo, V., Ouedraogo, T., Lebas, E., Hu, H., Ante-Testard, P. A., Gregorich, S., OBrien, K., Hsiang, M., Glidden, D., Arnold, B., Lietman, T., Oldenburg, C.

10.1101/2025.07.05.25329685 — Posted: 2025-07-06

Preferences for Tongue Swab versus Sputum Collection for Tuberculosis Testing: A Multi-Country Survey

Manoj, K., Borkman, A., Kim, A., Crowder, R., Ajide, B., Ali-Francia, K., Chirwa, M., Kamulegeya, L., Le, H., Trung, V. N., Venter, R., Bimba, J., Christopher, D. J., Dalay, V., Nguyen Van, H., Theron, G., Yu, C., Zamudio-Fuertes, C., Atim, J., Kerkhoff, A., Castro, M. d. M., Nahid, P., Denkinger, C., Cattamanchi, A., Dorman, S. E., West, N. S.

10.1101/2025.07.04.25330895 — Posted: 2025-07-05

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