bioRxiv/medRxiv TRiP Review Activity

251 Reviews — All Partners — Systems Biology

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TrueProbes: Quantitative Single-Molecule RNA-FISH Probe Design Improves RNA Detection
Hughes, J. J., Kesler, B. K., Adams, J. E., Hospelhorn, B. G., Neuert, G.
10.1101/2025.08.14.670355 — Posted: 2025-08-19 — Discussion: 2025-10-09  eLife
Tunable ligand discrimination via kinetic sorting
Dixit, P. D., Goetz, A., Madsen, R. R.
10.1101/2024.10.01.615884 — Posted: 2024-10-02 — Discussion: 2025-10-03  eLife
Genome-scale prediction of gene ontology from mass fingerprints reveals new metabolic gene functions
Vavricka, C., Mochizuki, M., Yuzawa, S., Murata, M., Yoshida, T., Watanabe, N., Nakatsui, M., Ishii, J., Hara, K., Alper, H. S., Hasunuma, T., Kondo, A., Araki, M.
10.1101/2024.11.27.625594 — Posted: 2024-12-02 — Discussion: 2025-10-01  EMBO Press
Regulation of Transcriptional Bursting and Spatial Patterning in Early Drosophila Embryo Development
Nieto, C., Vahdat, Z., Lim, B., Singh, A.
10.1101/2025.05.02.651973 — Posted: 2025-05-08 — Discussion: 2025-09-23  eLife
Multi-omics analysis of endothelial cells reveals the metabolic diversity that underlies endothelial cell functions
Durot, S., Doubleday, P. F., Schulla, L., Sabine, A., Petrova, T. V., Zamboni, N.
10.1101/2025.03.03.641143 — Posted: 2025-03-05 — Discussion: 2025-09-15  Review Commons
Cell type-specific network analysis in Diversity Outbred mice identifies genes potentially responsible for human bone mineral density GWAS associations
Dillard, L. J., Calabrese, G. M., Mesner, L. D., Farber, C. R.
10.1101/2024.05.20.594981 — Posted: 2024-05-21 — Discussion: 2025-09-02  eLife
Deep learning linking mechanistic models to single-cell transcriptomics data reveals transcriptional bursting in response to DNA damage
Huang, Z., Luo, S., Wang, Z., Zhang, Z., Jiang, B., Nie, Q., Zhang, J.
10.1101/2024.07.10.602845 — Posted: 2024-07-12 — Discussion: 2025-08-21  eLife
Exploiting fluctuations in gene expression to detect causal interactions between genes
Joly-Smith, E., Talpur, M. M., Allard, P., Papazotos, F., Potvin-Trottier, L., Hilfinger, A.
10.1101/2023.09.01.555799 — Posted: 2023-09-04 — Discussion: 2025-08-13  eLife
A push-pull system of repressors matches levels of glucose transporters to extracellular glucose in budding yeast
Montano-Gutierrez, L. F., Sturrock, M., Farquhar, I. L., Correia, K., Shahrezaei, V., Swain, P. S.
10.1101/2021.04.20.440667 — Posted: 2021-04-21 — Discussion: 2025-08-11  Review Commons
The zoo of the gene networks capable of pattern formation by extracellular signaling
Anhon, K. M., Ciudad, I. S.
10.1101/2025.05.06.652477 — Posted: 2025-05-07 — Discussion: 2025-08-06  eLife

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