bioRxiv/medRxiv TRiP Review Activity

259 Reviews — All Partners — Systems Biology

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Macrophages maintain signaling fidelity in response to ligand mixtures
Guo, X., Sen, S., Gonzalez, J., Hoffmann, A.
10.1101/2025.03.27.645368 — Posted: 2025-04-01 — Discussion: 2026-02-14  Review Commons
Identifying and targeting abnormal mitochondrial localization associated with psychoses
Haghighi, M., McPhie, D., Rohban, M., Logan, D. J., Haslum, J. F., Ewald, J. D., Karhohs, K. W., Weisbart, E., Cimini, B. A., Singh, S., Cohen, B. M., Carpenter, A. E.
10.1101/2025.10.08.676630 — Posted: 2025-10-08 — Discussion: 2026-02-11  Review Commons
Integrated metabolomics data analysis to generate mechanistic hypotheses with MetaProViz
Schmidt, C., Turei, D., Prymidis, D., Daley, M., Frezza, C., Saez-Rodriguez, J.
10.1101/2025.08.18.670781 — Posted: 2025-08-22 — Discussion: 2026-02-09  Review Commons
Benchmarking of signaling networks generated by large language models
Tewari, J., Dahl, B. W., Saucerman, J. J.
10.1101/2025.07.28.667217 — Posted: 2025-07-29 — Discussion: 2026-01-22  eLife
Deep learning linking mechanistic models to single-cell transcriptomics data reveals transcriptional bursting in response to DNA damage
Huang, Z., Luo, S., Wang, Z., Zhang, Z., Jiang, B., Nie, Q., Zhang, J.
10.1101/2024.07.10.602845 — Posted: 2024-07-12 — Discussion: 2026-01-16  eLife
From Noise to Models to Numbers: Evaluating Negative Binomial Models and Parameter Estimations in Single-Cell RNA-seq
Wang, Y., Shu, Z., Cao, Z., Grima, R.
10.1101/2025.05.05.652189 — Posted: 2025-05-12 — Discussion: 2025-12-17  Review Commons
Thymic selection of the T cell receptor repertoire is biased toward autoimmunity in females
Vantomme, H., Quiniou, V., Adda, L., Jouannet, C., Mhanna, V., Albalaa, C., Barennes, P., Coatnoan, N., Diderot, V., Dubois, J., Fourcade, G., Le Gouge, K., Nguekap Tchoumba, O., Pezous, M., Stys, P., Six, A., Mariotti Ferrandiz, E., Klatzmann, D.
10.1101/2025.01.21.633929 — Posted: 2025-01-23 — Discussion: 2025-12-08  eLife
Revealing global stoichiometry conservation architecture in cells from Raman spectral patterns
Kamei, K.-i. F., Kobayashi-Kirschvink, K. J., Nozoe, T., Nakaoka, H., Umetani, M., Wakamoto, Y.
10.1101/2023.05.09.539921 — Posted: 2024-03-06 — Discussion: 2025-11-26  eLife
Learning sequence-function relationships with scalable, interpretable Gaussian processes
Zhou, J., Marti-Gomez, C., Petti, S., McCandlish, D. M.
10.1101/2025.08.15.670613 — Posted: 2025-08-19 — Discussion: 2025-11-24  eLife
Combinatorial transcriptional codes specify macrophage polarization destinations
Chandra, N., Ravichandran, S., Bhatt, B., Balaji, K. N.
10.1101/2021.10.19.464946 — Posted: 2021-10-19 — Discussion: 2025-11-21  eLife

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