bioRxiv/medRxiv TRiP Review Activity

113 Reviews — eLife — Systems Biology

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Single-mRNA imaging and modeling reveal coupled translation initiation and elongation rates
Lamberti, I., Chao, J., Gobet, C., Naef, F.
10.1101/2025.04.30.651446 — Posted: 2025-05-05 — Discussion: 2026-02-17  eLife
Benchmarking of signaling networks generated by large language models
Tewari, J., Dahl, B. W., Saucerman, J. J.
10.1101/2025.07.28.667217 — Posted: 2025-07-29 — Discussion: 2026-01-22  eLife
Deep learning linking mechanistic models to single-cell transcriptomics data reveals transcriptional bursting in response to DNA damage
Huang, Z., Luo, S., Wang, Z., Zhang, Z., Jiang, B., Nie, Q., Zhang, J.
10.1101/2024.07.10.602845 — Posted: 2024-07-12 — Discussion: 2026-01-16  eLife
Thymic selection of the T cell receptor repertoire is biased toward autoimmunity in females
Vantomme, H., Quiniou, V., Adda, L., Jouannet, C., Mhanna, V., Albalaa, C., Barennes, P., Coatnoan, N., Diderot, V., Dubois, J., Fourcade, G., Le Gouge, K., Nguekap Tchoumba, O., Pezous, M., Stys, P., Six, A., Mariotti Ferrandiz, E., Klatzmann, D.
10.1101/2025.01.21.633929 — Posted: 2025-01-23 — Discussion: 2025-12-08  eLife
Revealing global stoichiometry conservation architecture in cells from Raman spectral patterns
Kamei, K.-i. F., Kobayashi-Kirschvink, K. J., Nozoe, T., Nakaoka, H., Umetani, M., Wakamoto, Y.
10.1101/2023.05.09.539921 — Posted: 2024-03-06 — Discussion: 2025-11-26  eLife
Learning sequence-function relationships with scalable, interpretable Gaussian processes
Zhou, J., Marti-Gomez, C., Petti, S., McCandlish, D. M.
10.1101/2025.08.15.670613 — Posted: 2025-08-19 — Discussion: 2025-11-24  eLife
Combinatorial transcriptional codes specify macrophage polarization destinations
Chandra, N., Ravichandran, S., Bhatt, B., Balaji, K. N.
10.1101/2021.10.19.464946 — Posted: 2021-10-19 — Discussion: 2025-11-21  eLife
TrueProbes: Quantitative Single-Molecule RNA-FISH Probe Design Improves RNA Detection
Hughes, J. J., Kesler, B. K., Adams, J. E., Hospelhorn, B. G., Neuert, G.
10.1101/2025.08.14.670355 — Posted: 2025-08-19 — Discussion: 2025-10-09  eLife
Tunable ligand discrimination via kinetic sorting
Dixit, P. D., Goetz, A., Madsen, R. R.
10.1101/2024.10.01.615884 — Posted: 2024-10-02 — Discussion: 2025-10-03  eLife
Regulation of Transcriptional Bursting and Spatial Patterning in Early Drosophila Embryo Development
Nieto, C., Vahdat, Z., Lim, B., Singh, A.
10.1101/2025.05.02.651973 — Posted: 2025-05-08 — Discussion: 2025-09-23  eLife

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