bioRxiv/medRxiv TRiP Review Activity

41 Reviews — Review Commons — Systems Biology

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Evolutionary rewiring of host metabolism and interferon signalling by SARS-CoV-2 variants
Giotis, E. S., Somji, R.-A., Brown, J. C., Rowles-Khalid, S., Abdullahi, T. B., Luo, D., Barthel, N., Mulleder, M., Ralser, M. S., Barclay, W. S. S., Rallis, C.
10.1101/2025.11.15.688605 — Posted: 2025-11-17 — Discussion: 2026-04-24  Review Commons
Recurrent Emergence of Boundary Cell Types During Evolution of Floral Bullseye Patterns
Oud, S., Zurowski, M. M., van der Jagt, P. L., Yeo, M. T. S., Walker, J. F., Moyroud, E., Vroomans, R. M. A.
10.1101/2025.05.03.651954 — Posted: 2025-05-03 — Discussion: 2026-04-17  Review Commons
Metabolic Trans-Omic Analysis Reveals Key Regulatory Disruption of Energy Metabolism in Alzheimer's Disease
Katayama, T., Sugimoto, H., Morita, K., Watanabe, H., Kuroda, S.
10.1101/2025.09.26.678758 — Posted: 2025-09-28 — Discussion: 2026-03-05  Review Commons
Macrophages maintain signaling fidelity in response to ligand mixtures
Guo, X., Sen, S., Gonzalez, J., Hoffmann, A.
10.1101/2025.03.27.645368 — Posted: 2025-04-01 — Discussion: 2026-02-14  Review Commons
Identifying and targeting abnormal mitochondrial localization associated with psychoses
Haghighi, M., McPhie, D., Rohban, M., Logan, D. J., Haslum, J. F., Ewald, J. D., Karhohs, K. W., Weisbart, E., Cimini, B. A., Singh, S., Cohen, B. M., Carpenter, A. E.
10.1101/2025.10.08.676630 — Posted: 2025-10-08 — Discussion: 2026-02-11  Review Commons
Integrated metabolomics data analysis to generate mechanistic hypotheses with MetaProViz
Schmidt, C., Turei, D., Prymidis, D., Daley, M., Frezza, C., Saez-Rodriguez, J.
10.1101/2025.08.18.670781 — Posted: 2025-08-22 — Discussion: 2026-02-09  Review Commons
From Noise to Models to Numbers: Evaluating Negative Binomial Models and Parameter Estimations in Single-Cell RNA-seq
Wang, Y., Shu, Z., Cao, Z., Grima, R.
10.1101/2025.05.05.652189 — Posted: 2025-05-12 — Discussion: 2025-12-17  Review Commons
Ubiquitous systems drift in the evolution of development
van der Jagt, P. L., Oud, S., Vroomans, R. M. A.
10.1101/2025.04.23.650280 — Posted: 2025-04-23 — Discussion: 2025-10-30  Review Commons
Unveiling Gene Perturbation Effects through Gene Regulatory Networks Inference from single-cell transcriptomic data
Corridori, C., Romeike, M., Nicoletti, G., Buecker, C., Suweis, S., Azaele, S., Martello, G.
10.1101/2024.05.10.593314 — Posted: 2024-05-10 — Discussion: 2025-10-21  Review Commons
Multi-omics analysis of endothelial cells reveals the metabolic diversity that underlies endothelial cell functions
Durot, S., Doubleday, P. F., Schulla, L., Sabine, A., Petrova, T. V., Zamboni, N.
10.1101/2025.03.03.641143 — Posted: 2025-03-05 — Discussion: 2025-09-15  Review Commons

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