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Reproducible genomics analysis pipelines with GNU Guix
Wurmus, R., Uyar, B., Osberg, B., Franke, V., Gosdschan, A., Wreczycka, K., Ronen, J., Akalin, A.
10.1101/298653 — Posted: 2018-04-11 — Discussion: 2022-01-22  GigaScience
Prot-SpaM: Fast alignment-free phylogeny reconstruction based on whole-proteome sequences
Leimeister, C.-A., Schellhorn, J., Schoebel, S., Gerth, M., Bleidorn, C., Morgenstern, B.
10.1101/306142 — Posted: 2018-04-23 — Discussion: 2022-01-22  GigaScience
Monitoring changes in the Gene Ontology and their impact on genomic data analysis
Jacobson, M., Sedeno-Cortes, A. E., Pavlidis, P.
10.1101/320861 — Posted: 2018-05-13 — Discussion: 2022-01-22  GigaScience
Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes
Johnson, L. K., Alexander, H., Brown, C. T.
10.1101/323576 — Posted: 2018-05-17 — Discussion: 2022-01-22  GigaScience
NAT/NCS2-hound: A webserver for the detection and evolutionary classification of prokaryotic and eukaryotic nucleobase-cation symporters of the NAT/NCS2 family.
Chaliotis, A., Vlastaridis, P., Ntountoumi, C., Botou, M., Yalelis, V., Lazou, P., Tatsaki, K., Mossialos, D., Frillingos, S., Amoutzias, G.
10.1101/332452 — Posted: 2018-05-28 — Discussion: 2022-01-22  GigaScience
SMRT long-read sequencing and Direct Label and Stain optical maps allow the generation of a high-quality genome assembly for the European barn swallow (Hirundo rustica rustica)
Formenti, G., Chiara, M., Poveda, L., Francoijs, K.-J., Bonisoli-Alquati, A., Canova, L., Gianfranceschi, L. E. A., Horner, D., Saino, N.
10.1101/374512 — Posted: 2018-07-23 — Discussion: 2022-01-22  GigaScience
Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation
Shang, Z., Chen, D., Wang, Q., Wang, S., Deng, Q., Wu, L., Liu, C., Ding, X., Wang, S., Zhong, J., Zhang, D., Cai, X., Zhu, S., Yang, H., Liu, L., Fink, J. L., Chen, F., Liu, X., Gao, Z., Xu, X.
10.1101/384131 — Posted: 2018-08-03 — Discussion: 2022-01-22  GigaScience
MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks
Peng, Y., Tang, S., WANG, D., Zhong, H., Jia, H., Cai, X., Zhang, Z., Xiao, M., Yang, H., Wang, J., Kristiansen, K., Xu, X., li, j.
10.1101/398636 — Posted: 2018-08-24 — Discussion: 2022-01-22  GigaScience
PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud
Peters, K., Bradbury, J., Bergmann, S., Capuccini, M., Cascante, M., de Atauri, P., Ebbels, T., Foguet, C., Glen, R., Gonzalez-Beltran, A., Handakas, E., Hankemeier, T., Herman, S., Haug, K., Holub, P., Izzo, M., Jacob, D., Johnson, D., Jourdan, F., Kale, N., Karaman, I., Khalili, B., Emami Khoonsari, P., Kultima, K., Lampa, S., Larsson, A., Moreno, P., Neumann, S., Novella, J. A., O'Donovan, C., Pearce, J. T., Peluso, A., Pireddu, L., Piras, M. E., Reed, M. A., Rocca-Serra, P., Roger, P., Rosato, A., Rueedi, R., Ruttkies, C., Sadawi, N., Salek, R., Sansone, S.-A., Selivanov, V., Spjuth, O.
10.1101/409151 — Posted: 2018-09-06 — Discussion: 2022-01-22  GigaScience
Imaging tissues and cells beyond the diffraction limit with structured illumination microscopy and Bayesian image reconstruction
Pospisil, J., Lukes, T., Bendesky, J., Fliegel, K., Spendier, K., Hagen, G. M.
10.1101/426296 — Posted: 2018-09-25 — Discussion: 2022-01-22  GigaScience

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