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parSMURF, a High Performance Computing tool for the genome-wide detection of pathogenic variants
Petrini, A., Mesiti, M., Schubach, M., Frasca, M., Danis, D., Re, M., Grossi, G., Cappelletti, L., Castrignano', T., Robinson, P. N., Valentini, G.
10.1101/2020.03.18.994079 — Posted: 2020-03-20 — Discussion: 2022-01-24  GigaScience
Correcting for experiment-specific variability in expression compendia can remove underlying signals
Lee, A. J., Park, Y., Doing, G., Hogan, D. A., Greene, C. S.
10.1101/2020.05.03.066597 — Posted: 2020-05-03 — Discussion: 2022-01-24  GigaScience
Efficiently processing amplicon sequencing data for microbial ecology with dadasnake, a DADA2 implementation in Snakemake
Weissbecker, C., Schnabel, B., Heintz-Buschart, A.
10.1101/2020.05.17.095679 — Posted: 2020-05-19 — Discussion: 2022-01-24  GigaScience
Understanding the impact of preprocessing pipelines on neuroimaging cortical surface analyses
Bhagwat, N., Barry, A., Dickie, E. W., Brown, S. T., Devenyi, G. A., Hatano, K., DuPre, E., Dagher, A., Chakravarty, M. M., Greenwood, C. M. T., Misic, B., Kennedy, D. N., Poline, J.-B.
10.1101/2020.05.22.100180 — Posted: 2020-05-26 — Discussion: 2022-01-24  GigaScience
A single-cell RNA-seq Training and Analysis Suite using the Galaxy Framework
Tekman, M., Batut, B., Ostrovsky, A., Antoniewski, C., Clements, D., Ramirez, F., Etherington, G. J., Hotz, H.-R., Scholtalbers, J., Manning, J. R., Bellenger, L., Doyle, M. A., Heydarian, M., Huang, N., Soranzo, N., Moreno, P., Papatheodorou, I., Nekrutenko, A., Taylor, J., Blankenberg, D., Backofen, R., Grüning, B.
10.1101/2020.06.06.137570 — Posted: 2020-06-08 — Discussion: 2022-01-24  GigaScience
A chromosome-level genome assembly for the Eastern Fence Lizard (Sceloporus undulatus), a reptile model for physiological and evolutionary ecology
Westfall, A. K., Telemeco, R. S., Grizante, M. B., Waits, D. S., Clark, A. D., Simpson, D. Y., Klabacka, R. L., Sullivan, A. P., Perry, G. H., Sears, M. W., Cox, C. L., Cox, R. M., Gifford, M. E., John-Alder, H. B., Langkilde, T., Angilletta, M., Leache, A., Tollis, M., Kusumi, K., Schwartz, T. S.
10.1101/2020.06.06.138248 — Posted: 2020-06-06 — Discussion: 2022-01-24  GigaScience
Fluorescence Microscopy Datasets for Training Deep Neural Networks
Hagen, G. M., Bendesky, J., Machado, R., Nguyen, T.-A., Kumar, T., Ventura, J.
10.1101/2020.06.17.158097 — Posted: 2020-06-18 — Discussion: 2022-01-24  GigaScience
The germline mutational process in rhesus macaque and its implications for phylogenetic dating
Bergeron, L. A., Besenbacher, S., Bakker, J., Zheng, J., Li, P., Pacheco, G., Sinding, M.-H. S., Kamilari, M., Gilbert, M. T. P., Schierup, M. H., Zhang, G.
10.1101/2020.06.22.164178 — Posted: 2020-06-23 — Discussion: 2022-01-24  GigaScience
Streamlining Data-Intensive Biology With Workflow Systems
Reiter, T., Brooks, P. T., Irber, L., Joslin, S. E. K., Reid, C. M., Scott, C., Brown, C. T., Pierce, N. T.
10.1101/2020.06.30.178673 — Posted: 2020-07-01 — Discussion: 2022-01-24  GigaScience
Lilikoi V2.0: a deep-learning enabled, personalized pathway-based R package for diagnosis and prognosis predictions using metabolomics data
Xinying Fang, Yu Liu, Zhijie Ren, Yuheng Du, Qianhui Huang, Lana X. Garmire
10.1101/2020.07.09.195677 — Posted: 2020-07-10 — Discussion: 2022-01-24  GigaScience

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