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Distinguish virulent and temperate phage-derived sequences in metavirome data with a deep learning approach
Wu, S., Fang, Z., Tan, J., Li, M., Wang, C., Guo, Q., Xu, C., Jiang, X., Zhu, H.
10.1101/2020.12.25.424404 — Posted: 2020-12-26 — Discussion: 2022-02-06  GigaScience
Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment
Fu, Y., Mahmoud, M., Muraliraman, V. V., Sedlazeck, F. J., Treangen, T. J.
10.1101/2021.05.29.446291 — Posted: 2021-05-30 — Discussion: 2022-02-06  GigaScience
SwiftOrtho: a Fast, Memory-Efficient, Multiple Genome Orthology Classifier
Hu, X., Friedberg, I.
10.1101/543223 — Posted: 2019-02-08 — Discussion: 2022-02-06  GigaScience
IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis
Chen, Y.-C., Suresh, A., Underbayev, C., Sun, C., Singh, K., Seifuddin, F., Wiestner, A., Pirooznia, M.
10.1101/596817 — Posted: 2019-04-03 — Discussion: 2022-02-06  GigaScience
Interactions between strains govern the eco-evolutionary dynamics of microbial communities
Goyal, A., Bittleston, L. S., Leventhal, G. E., Lu, L., Cordero, O. X.
10.1101/2021.01.04.425224 — Posted: 2021-01-04 — Discussion: 2022-02-04  eLife
Nuclear Hormone Receptor NHR-49 controls a HIF-1-independent hypoxia adaptation pathway in Caenorhabditis elegans
Doering, K. R. S., Cheng, X., Milburn, L., Ratnappan, R., Ghazi, A., Miller, D. L., Taubert, S.
10.1101/2021.02.24.432575 — Posted: 2021-02-24 — Discussion: 2022-02-04  eLife
Genetically engineered insects with sex-selection and genetic incompatibility enable population suppression
Upadhyay, A., Feltman, N., Sychla, A., Das, S., Maselko, M., Smanski, M.
10.1101/2021.06.11.448100 — Posted: 2021-06-11 — Discussion: 2022-02-04  eLife
Cis-Regulatory Hubs: a Relevant 3D Model to Study the Genetics of Complex Diseases with an Application to Schizophrenia
Mangnier, L., Joly-Beauparlant, C., Droit, A., Bilodeau, S., Bureau, A.
10.1101/2021.06.22.449467 — Posted: 2021-06-22 — Discussion: 2022-02-04  EMBO Press
LRET-derived HADDOCK structural models describe the conformational heterogeneity required for processivity of the Mre11-Rad50 DNA damage repair complex
Canny, M. D., Latham, M.
10.1101/2021.08.04.455035 — Posted: 2021-08-04 — Discussion: 2022-02-04  eLife
Role of YAP in early ectodermal specification anda Huntington's Disease model of human neurulation
Piccolo, F. M., Kastan, N. R., Haremaki, T., Tian, Q., Laundos, T. L., De Santis, R., Carroll, T. S., Luo, J.-D., Gnedeva, K., Etoc, F., Hudspeth, A. J., Brivanlou, A. H.
10.1101/2021.08.11.455964 — Posted: 2021-08-11 — Discussion: 2022-02-04  eLife

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