bioRxiv/medRxiv TRiP Review Activity

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DrivAER: Identification of driving transcriptional programs in single-cell RNA sequencing data
Simon, L. M., Yan, F., Zhao, Z.
10.1101/864165 — Posted: 2019-12-05 — Discussion: 2022-01-24  GigaScience
Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods
Courtine, D., Provaznik, J., Reboul, J., Blanc, G., Benes, V., Ewbank, J. J.
10.1101/866020 — Posted: 2019-12-06 — Discussion: 2022-01-24  GigaScience
Genetic and environmental effects on the immune phenotypes in type 1 diabetes
Chu, X., Janssen, A. W. M., Koenen, H., Chang, L., He, X., Joosten, I., Stienstra, R., Kuijpers, Y., Wijmenga, C., Xu, C.-J., Tack, C. J., Li, Y., Netea, M. G.
10.1101/2021.12.06.21264056 — Posted: 2021-12-07 — Discussion: 2022-01-24  eLife
A critical comparison of technologies for a plant genome sequencing project
Paajanen, P., Kettleborough, G., Lopez-Girona, E., Giolai, M., Heavens, D., Baker, D., Lister, A., Wilde, G., Hein, I., Macaulay, I., Bryan, G. J., Clark, M. D.
10.1101/201830 — Posted: 2017-10-11 — Discussion: 2022-01-23  GigaScience
TuBA: Tunable Biclustering Algorithm Reveals Clinically Relevant Tumor Transcriptional Profiles in Breast Cancer
Singh, A., Bhanot, G., Khiabanian, H.
10.1101/245712 — Posted: 2018-01-25 — Discussion: 2022-01-23  GigaScience
CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language
Kotliar, M., Kartashov, A., Barski, A.
10.1101/249243 — Posted: 2018-01-17 — Discussion: 2022-01-23  GigaScience
Comparative Genomics and Genome Evolution in Birds-of-paradise
Prost, S., Armstrong, E. E., Nylander, J., Thomas, G. W. C., Suh, A., Petersen, B., Dalen, L., Benz, B., Blom, M. P. K., Palkopoulou, E., Ericson, P. G. P., Irestedt, M.
10.1101/287086 — Posted: 2018-03-22 — Discussion: 2022-01-23  GigaScience
Single-cell Transcriptomic Landscape of Nucleated Cells in Umbilical Cord Blood
Zhao, Y., Li, X., Wang, J., Wan, Z., Gao, K., Yi, G., Wang, X., Wu, J., Fan, B., Zhang, W., Chen, F., Yang, H., Wang, J., Xu, X., Li, B., Liu, S., Zhao, W., Hou, Y., Liu, X.
10.1101/346106 — Posted: 2018-06-13 — Discussion: 2022-01-23  GigaScience
Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data
Webster, T. H., Couse, M., Grande, B. M., Karlins, E., Phung, T., Richmond, P. A., Whitford, W., Wilson Sayres, M. A.
10.1101/346940 — Posted: 2018-06-14 — Discussion: 2022-01-23  GigaScience
A signature of cognitive deficits and brain atrophy that is highly predictive of progression to Alzheimer’s dementia
Tam, A., Dansereau, C., Iturria-Medina, Y., Urchs, S., Orban, P., Breitner, J., Bellec, P., Alzheimer's Disease Neuroimaging Initiative
10.1101/352344 — Posted: 2018-06-20 — Discussion: 2022-01-23  GigaScience

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