bioRxiv/medRxiv TRiP Review Activity

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Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design
Weber, L. M., Hippen, A. A., Hickey, P. F., Berrett, K. C., Gertz, J., Doherty, J. A., Greene, C. S., Hicks, S. C.
10.1101/2020.11.06.371963 — Posted: 2020-11-07 — Discussion: 2022-02-06  GigaScience
Bias invariant RNA-seq metadata annotation
Wartmann, H., Heins, S., Kloiber, K., Bonn, S.
10.1101/2020.11.26.399568 — Posted: 2020-11-27 — Discussion: 2022-02-06  GigaScience
Distinguish virulent and temperate phage-derived sequences in metavirome data with a deep learning approach
Wu, S., Fang, Z., Tan, J., Li, M., Wang, C., Guo, Q., Xu, C., Jiang, X., Zhu, H.
10.1101/2020.12.25.424404 — Posted: 2020-12-26 — Discussion: 2022-02-06  GigaScience
Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment
Fu, Y., Mahmoud, M., Muraliraman, V. V., Sedlazeck, F. J., Treangen, T. J.
10.1101/2021.05.29.446291 — Posted: 2021-05-30 — Discussion: 2022-02-06  GigaScience
SwiftOrtho: a Fast, Memory-Efficient, Multiple Genome Orthology Classifier
Hu, X., Friedberg, I.
10.1101/543223 — Posted: 2019-02-08 — Discussion: 2022-02-06  GigaScience
IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis
Chen, Y.-C., Suresh, A., Underbayev, C., Sun, C., Singh, K., Seifuddin, F., Wiestner, A., Pirooznia, M.
10.1101/596817 — Posted: 2019-04-03 — Discussion: 2022-02-06  GigaScience
Interactions between strains govern the eco-evolutionary dynamics of microbial communities
Goyal, A., Bittleston, L. S., Leventhal, G. E., Lu, L., Cordero, O. X.
10.1101/2021.01.04.425224 — Posted: 2021-01-04 — Discussion: 2022-02-04  eLife
Nuclear Hormone Receptor NHR-49 controls a HIF-1-independent hypoxia adaptation pathway in Caenorhabditis elegans
Doering, K. R. S., Cheng, X., Milburn, L., Ratnappan, R., Ghazi, A., Miller, D. L., Taubert, S.
10.1101/2021.02.24.432575 — Posted: 2021-02-24 — Discussion: 2022-02-04  eLife
Genetically engineered insects with sex-selection and genetic incompatibility enable population suppression
Upadhyay, A., Feltman, N., Sychla, A., Das, S., Maselko, M., Smanski, M.
10.1101/2021.06.11.448100 — Posted: 2021-06-11 — Discussion: 2022-02-04  eLife
Cis-Regulatory Hubs: a Relevant 3D Model to Study the Genetics of Complex Diseases with an Application to Schizophrenia
Mangnier, L., Joly-Beauparlant, C., Droit, A., Bilodeau, S., Bureau, A.
10.1101/2021.06.22.449467 — Posted: 2021-06-22 — Discussion: 2022-02-04  EMBO Press

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