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Framework for determining accuracy of RNA sequencing data for gene expression profiling of single samples
Beale, H. C., Roger, J., Cattle, M., McKay, L., Learned, K., Lyle, G., Kephart, E., Currie, R., Lam, D. L., Sanders, L., Pfeil, J., Vivian, J., Bjork, I., Salama, S., Haussler, D., Vaske, O.
10.1101/716829 — Posted: 2019-07-30 — Discussion: 2022-01-24  GigaScience
Sequencing smart: De novo sequencing and assembly approaches for non-model mammals.
Etherington, G. J., Heavens, D., Baker, D., Lister, A., McNelly, R., Garcia Accinelli, G., Clavijo, B. J., Macaulay, I., Haerty, W., Di Palma, F.
10.1101/723890 — Posted: 2019-08-05 — Discussion: 2022-01-24  GigaScience
Multi-Dimensional Machine Learning Approaches for Fruit Shape Recognition and Phenotyping in Strawberry
Feldmann, M. J., Hardigan, M. A., Famula, R. A., Lopez, C. M., Tabb, A., Cole, G. S., Knapp, S. J.
10.1101/736397 — Posted: 2019-08-15 — Discussion: 2022-01-24  GigaScience
Global ocean resistome revealed: exploring Antibiotic Resistance Genes (ARGs) abundance and distribution on TARA oceans samples through machine learning tools
Cuadrat, R. R. d. C., Sorokina, M., Andrade, B. G., Davila, A. M. R.
10.1101/765446 — Posted: 2019-09-19 — Discussion: 2022-01-24  GigaScience
Trans-NanoSim characterizes and simulates nanopore RNA-seq data
Hafezqorani, S., Yang, C., Nip, K. M., Warren, R. L., Birol, I.
10.1101/800110 — Posted: 2019-10-10 — Discussion: 2022-01-24  GigaScience
Community Standards for Open Cell Migration Data
Gonzalez-Beltran, A. N., Masuzzo, P., Ampe, C., Bakker, G.-J., Besson, S., Eibl, R. H., Friedl, P., Gunzer, M., Kittisopikul, M., Le Devedec, S. E., Leo, S., Moore, J., Paran, Y., Prilusky, J., Rocca-Serra, P., Roudot, P., Schuster, M., Sergeant, G., Stromblad, S., Swedlow, J. R., van Erp, M., Van Troys, M., Zaritsky, A., Sansone, S.-A., Martens, L.
10.1101/803064 — Posted: 2019-10-14 — Discussion: 2022-01-24  GigaScience
Imputing missing RNA-seq data from DNA methylation by using transfer learning based-deep neural network
Zhou, X., Chai, H., Zhao, H., Luo, C.-H., Yang, Y.
10.1101/803692 — Posted: 2019-10-13 — Discussion: 2022-01-24  GigaScience
High-quality chromosome-scale assembly of the walnut (Juglans regia L) reference genome
Marrano, A., Britton, M., Zaini, P. A., Zimin, A., Workman, R., Puiu, D., Bianco, L., Di Pierro, E. A., Allen, B., Chakraborty, S., Troggio, M., Leslie, C., Timp, W., Dendekar, A., Salzberg, S., Neale, D. B.
10.1101/809798 — Posted: 2019-10-17 — Discussion: 2022-01-24  GigaScience
CRISPRCasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems
Padilha, V. A., Alkhnbashi, O. S., Shah, S. A., de Carvalho, A. C. P. L. F., Backofen, R.
10.1101/817619 — Posted: 2019-10-31 — Discussion: 2022-01-24  GigaScience
A MAP of tumor-host interactions in glioma at single cell resolution
Caruso, F., Garofano, L., D'Angelo, F., Yu, K., Tang, F., Yuan, J., Zhang, J., Cerulo, L., Bedognetti, D., Sims, P., Suva, M., Su, X.-D., Lasorella, A., Iavarone, A., Ceccarelli, M.
10.1101/827758 — Posted: 2019-11-01 — Discussion: 2022-01-24  GigaScience

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