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101 Reviews — EMBO Press — Systems Biology

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Distinct Cellular States Determine Calcium Signaling Response
Jason Yao, Roy Wollman
10.1101/059287 — Posted: 2016-06-16 — Discussion: 2019-09-22  EMBO Press
From word models to executable models of signaling networks using automated assembly
Gyori, B. M., Bachman, J. A., Subramanian, K., Muhlich, J. L., Galescu, L., Sorger, P. K.
10.1101/119834 — Posted: 2017-03-23 — Discussion: 2019-09-22  EMBO Press
A deep proteome and transcriptome abundance atlas of 29 healthy human tissues
Wang, D., Eraslan, B., Wieland, T., Hallstrom, B. M., Hopf, T., Zolg, D. P., Zecha, J., Asplund, A., Li, L.-h., Meng, C., Frejno, M., Schmidt, T., Schnatbaum, K., Wilhelm, M., Ponten, F., Uhlen, M., Gagneur, J., Hahne, H., Kuster, B.
10.1101/357137 — Posted: 2018-06-27 — Discussion: 2019-09-22  EMBO Press
In Situ Genotyping Of A Pooled Strain Library After Characterizing Complex Phenotypes
Lawson, M. J., Camsund, D., Larsson, J., Baltekin, O., Fange, D., Elf, J.
10.1101/142729 — Posted: 2017-05-26 — Discussion: 2019-09-22  EMBO Press
Fibroblast state switching orchestrates dermal maturation and wound healing
Rognoni, E., Oliveira Pisco, A., Hiratsuka, T., Sipila, K., Belmonte, J., Mobasseri, A., Dilao, R., Watt, F.
10.1101/236232 — Posted: 2017-12-18 — Discussion: 2019-09-22  EMBO Press
Timing of gene expression in a cell-fate decision system
Aymoz, D., Sole, C., Pierre, J.-J., Schmitt, M., de Nadal, E., Posas, F., Pelet, S.
10.1101/197103 — Posted: 2017-10-02 — Discussion: 2019-09-22  EMBO Press
Differential dynamics of the mammalian mRNA and protein expression response to misfolding stress
Zhe Cheng, Guoshou Teo, Sabrina Krueger, Tara Rock, Hiromi W.L. Koh, Hyungwon Choi, Christine Vogel
10.1101/032797 — Posted: 2015-11-26 — Discussion: 2019-09-22  EMBO Press
MODELING SIGNALING-DEPENDENT PLURIPOTENT CELL STATES WITH BOOLEAN LOGIC CAN PREDICT CELL FATE TRANSITIONS
Yachie-Kinoshita, A., Onishi, K., Ostblom, J., Posfai, E., Rossant, J., Zandstra, P. W.
10.1101/115683 — Posted: 2017-03-10 — Discussion: 2019-09-22  EMBO Press
Co-existing feedback loops generate tissue-specific circadian rhythms
Pett, J. P., Kondoff, M., Bordyugov, G., Kramer, A., Herzel, H.
10.1101/304451 — Posted: 2018-04-19 — Discussion: 2019-09-22  EMBO Press
Quantification and discovery of sequence determinants of protein per mRNA amount in 29 human tissues
Eraslan, B., Wang, D., Gusic, M., Prokisch, H., Hallstrom, B. M., Uhlen, M., Asplund, A., Ponten, F., Wieland, T., Hopf, T., Hahne, H., Kuster, B., Gagneur, J.
10.1101/353763 — Posted: 2018-06-27 — Discussion: 2019-09-22  EMBO Press

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