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Genome-scale prediction of gene ontology from mass fingerprints reveals new metabolic gene functions
Vavricka, C., Mochizuki, M., Yuzawa, S., Murata, M., Yoshida, T., Watanabe, N., Nakatsui, M., Ishii, J., Hara, K., Alper, H. S., Hasunuma, T., Kondo, A., Araki, M.
10.1101/2024.11.27.625594 — Posted: 2024-12-02 — Discussion: 2025-10-01  EMBO Press
Chronic replication stress-mediated genomic instability disrupts placenta development in mice
Munisha, M., Huang, R., Schimenti, J. C.
10.1101/2025.02.28.640689 — Posted: 2025-03-04 — Discussion: 2025-10-01  Review Commons
Mapping of in vivo cleavage sites uncovers a major role for yeast RNase III in regulating protein-coding genes
Notice-Sarpaning, L.-A., Catala, M., Elela, S. A., Van Hoof, A.
10.1101/2025.03.07.642061 — Posted: 2025-03-11 — Discussion: 2025-10-01  eLife
A tissue boundary orchestrates the segregation of inner ear sensory organs
Chen, Z., Xu, S., Zak, M., Daudet, N. A.
10.1101/2022.03.03.482809 — Posted: 2022-03-04 — Discussion: 2025-09-30  eLife
SPEX: A modular end-to-end analytics tool for spatially resolved omics of tissues
Pechuan Jorge, X., Li, X., Risom, T., Zubkov, A., Tabatsky, E., Prilipko, A., Ye, X., Shi, Z., Nowicka, m., Peale, F., Hibar, D., Ziai, J., Jesudason, R., Orlova, D.
10.1101/2022.08.22.504841 — Posted: 2022-08-23 — Discussion: 2025-09-30  GigaScience
Clonal stochasticity in early NK cell response to mouse cytomegalovirus is generated by mature subsets of varying proliferative ability
Wethington, D., Potempa, M., Giuliani, G., Aguilar, O. A., Grassmann, S., Stewart, W., Adams, N. M., Sun, J. C., Lanier, L. L., Das, J.
10.1101/2023.09.07.556760 — Posted: 2023-09-08 — Discussion: 2025-09-30  eLife
First chromosome-level genome assembly of the colonial tunicate Botryllus schlosseri
De Thier, O., Tawfeeq, M. M., Faure, R., Lebel, M., Dru, P., Blanchoud, S., Alie, A., Brown, F. D., Flot, J.-F., Tiozzo, S.
10.1101/2024.05.29.594498 — Posted: 2024-06-02 — Discussion: 2025-09-30  GigaScience
Nanopore- and AI-empowered metagenomic viability inference
Urel, H., Benassou, S., Reska, T., Marti, H., Rayo, E., Martin, E. J., Schloter, M., Ferguson, J. M., Kesselheim, S., Borel, N., Urban, L.
10.1101/2024.06.10.598221 — Posted: 2024-06-11 — Discussion: 2025-09-30  GigaScience
PathoGFAIR: a collection of FAIR and adaptable (meta)genomics workflows for (foodborne) pathogens detection and tracking
Nasr, E., Henger, A., Gruning, B., Zierep, P., Batut, B.
10.1101/2024.06.26.600753 — Posted: 2024-06-30 — Discussion: 2025-09-30  GigaScience
The Open Pediatric Cancer Project
Geng, Z., Wafula, E., Corbett, R. J., Zhang, Y., Jin, R., Gaonkar, K. S., Shukla, S., Rathi, K. S., Hill, D., Lahiri, A., Miller, D. P., Sickler, A., Keith, K., Blackden, C., Chroni, A., Brown, M. A., Kraya, A. A., Koschmann, C. J., Aldape, K., Huang, X., Rood, B. R., Mason, J. L., Trooskin, G. R., Abdullaev, Z., Wang, P., Zhu, Y., Farrow, B. K., Farrel, A., Dybas, J. M., Zhong, C., Van Kuren, N., Zhang, B., Santi, M., Phul, S., Chinwalla, A. T., Resnick, A. C., Diskin, S. J., Tasian, S., Stefankiewicz, S., Maris, J. M., Ennis, B. M., Lueder, M. R., Naqvi, A. S., Coleman, N., Ma, W., Taylor, D
10.1101/2024.07.09.599086 — Posted: 2024-07-11 — Discussion: 2025-09-30  GigaScience

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