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Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American killifish from the Fundulus genus
Johnson, L. K., Sahasrabudhe, R., Gill, T., Roach, J. L., Froenicke, L., Brown, C. T., Whitehead, A.
10.1101/686246 — Posted: 2019-06-28 — Discussion: 2022-01-24  GigaScience
Multivariate GWAS: Generalized Linear Models, Prior Weights, and Double Sparsity
Chu, B. B., Keys, K. L., Sinsheimer, J. S., Lange, K.
10.1101/697755 — Posted: 2019-07-11 — Discussion: 2022-01-24  GigaScience
Global Analysis of Human mRNA Folding Disruptions in Synonymous Variants Demonstrates Significant Population Constraint
Gaither, J. B. S., Lammi, G. E., Li, J. L., Gordon, D. M., Kuck, H. C., Kelly, B. J., Fitch, J. R., White, P.
10.1101/712679 — Posted: 2019-07-24 — Discussion: 2022-01-24  GigaScience
Framework for determining accuracy of RNA sequencing data for gene expression profiling of single samples
Beale, H. C., Roger, J., Cattle, M., McKay, L., Learned, K., Lyle, G., Kephart, E., Currie, R., Lam, D. L., Sanders, L., Pfeil, J., Vivian, J., Bjork, I., Salama, S., Haussler, D., Vaske, O.
10.1101/716829 — Posted: 2019-07-30 — Discussion: 2022-01-24  GigaScience
Sequencing smart: De novo sequencing and assembly approaches for non-model mammals.
Etherington, G. J., Heavens, D., Baker, D., Lister, A., McNelly, R., Garcia Accinelli, G., Clavijo, B. J., Macaulay, I., Haerty, W., Di Palma, F.
10.1101/723890 — Posted: 2019-08-05 — Discussion: 2022-01-24  GigaScience
Multi-Dimensional Machine Learning Approaches for Fruit Shape Recognition and Phenotyping in Strawberry
Feldmann, M. J., Hardigan, M. A., Famula, R. A., Lopez, C. M., Tabb, A., Cole, G. S., Knapp, S. J.
10.1101/736397 — Posted: 2019-08-15 — Discussion: 2022-01-24  GigaScience
Global ocean resistome revealed: exploring Antibiotic Resistance Genes (ARGs) abundance and distribution on TARA oceans samples through machine learning tools
Cuadrat, R. R. d. C., Sorokina, M., Andrade, B. G., Davila, A. M. R.
10.1101/765446 — Posted: 2019-09-19 — Discussion: 2022-01-24  GigaScience
Trans-NanoSim characterizes and simulates nanopore RNA-seq data
Hafezqorani, S., Yang, C., Nip, K. M., Warren, R. L., Birol, I.
10.1101/800110 — Posted: 2019-10-10 — Discussion: 2022-01-24  GigaScience
Community Standards for Open Cell Migration Data
Gonzalez-Beltran, A. N., Masuzzo, P., Ampe, C., Bakker, G.-J., Besson, S., Eibl, R. H., Friedl, P., Gunzer, M., Kittisopikul, M., Le Devedec, S. E., Leo, S., Moore, J., Paran, Y., Prilusky, J., Rocca-Serra, P., Roudot, P., Schuster, M., Sergeant, G., Stromblad, S., Swedlow, J. R., van Erp, M., Van Troys, M., Zaritsky, A., Sansone, S.-A., Martens, L.
10.1101/803064 — Posted: 2019-10-14 — Discussion: 2022-01-24  GigaScience
Imputing missing RNA-seq data from DNA methylation by using transfer learning based-deep neural network
Zhou, X., Chai, H., Zhao, H., Luo, C.-H., Yang, Y.
10.1101/803692 — Posted: 2019-10-13 — Discussion: 2022-01-24  GigaScience

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