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101 Reviews — EMBO Press — Systems Biology

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Patient-specific logic models of signaling pathways from screenings on cancer biopsies to prioritize personalized combination therapies
Eduati, F., Jaaks, P., Merten, C. A., Garnett, M. J., Saez-Rodriguez, J.
10.1101/422998 — Posted: 2018-09-21 — Discussion: 2020-06-04  EMBO Press
Translational efficiency across healthy and tumor tissues is proliferation-related
Hernandez-Alias, X., Benisty, H., Schaefer, M. H., Serrano, L.
10.1101/782227 — Posted: 2019-09-25 — Discussion: 2020-06-04  EMBO Press
Mammalian gene expression variability is explained by underlying cell state
Foreman, R., Wollman, R.
10.1101/626424 — Posted: 2019-05-03 — Discussion: 2020-06-04  EMBO Press
Impact of C-terminal amino acid composition on protein expression in bacteria
Weber, M., Burgos, R., Yus, E., Yang, J.-S., Lluch-Senar, M., Serrano, L.
10.1101/751305 — Posted: 2019-08-29 — Discussion: 2020-06-04  EMBO Press
Time-resolved genome-scale profiling reveals a causal expression network
Hackett, S. R., Baltz, E. A., Coram, M., Wranik, B. J., Kim, G., Baker, A., Fan, M., Hendrickson, D. G., Berndl, M., McIsaac, R. S.
10.1101/619577 — Posted: 2019-05-01 — Discussion: 2020-06-04  EMBO Press
Estrogen receptor alpha controls gene expression via translational offsetting
Lorent, J., Rebello, R. J., van Hoef, V., Lawrence, M. G., Szkop, K. J., Kusnadi, E., Samreen, B., Balanathan, P., Scharmann, K., Takizawa, I., Leidel, S. A., Risbridger, G. P., Topisirovic, I., Larsson, O., Furic, L.
10.1101/507574 — Posted: 2018-12-28 — Discussion: 2019-11-26  EMBO Press
Sufficiency analysis of estrogen responsive enhancers using synthetic activators
Ginley-Hidinger, M., Carleton, J. B., Rodriguez, A. C., Berrett, K. C., Gertz, J.
10.1101/479709 — Posted: 2018-11-26 — Discussion: 2019-11-26  EMBO Press
Assigning Function To Natural Allelic Variation Via Dynamic Modeling Of Gene Network Induction
Richard, M., Chuffart, F., Duplus-Bottin, H., Pouyet, F., Spichty, M., Fulcrand, E., Entrevan, M., Barthelaix, A., Springer, M., Jost, D., Yvert, G.
10.1101/140467 — Posted: 2017-05-20 — Discussion: 2019-09-22  EMBO Press
Deciphering microbial interactions in synthetic human gut microbiome communities
Venturelli, O. S., Carr, A. C., Fisher, G., Hsu, R. H., Lau, R., Bowen, B. P., Northen, T., Arkin, A. P.
10.1101/228395 — Posted: 2017-12-03 — Discussion: 2019-09-22  EMBO Press
Non-canonical circadian oscillations in Drosophila S2 cells drive gene-expression cycles coupled to metabolic oscillations
Rey, G., Milev, N. B., Valekunja, U. K., Ch, R., Ray, S., Silva Dos Santos, M., Nagy, A. D., Antrobus, R., MacRae, J. I., Reddy, A. B.
10.1101/191338 — Posted: 2017-09-20 — Discussion: 2019-09-22  EMBO Press

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