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101 Reviews — EMBO Press — Systems Biology

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Proteome constraints reveal targets for improving microbial fitness in nutrient-rich environments
Chen, Y., Pelt-KleinJan, E. v., Olst, B. v., Douwenga, S., Boeren, S., Bachmann, H., Molenaar, D., Nielsen, J., Teusink, B.
10.1101/2020.10.15.340554 — Posted: 2020-10-16 — Discussion: 2021-05-04  EMBO Press
Urinary proteome profiling for stratifying patients with familial Parkinsons disease
Virreira Winter, S., Karayel, O., Strauss, M. T., Padmanabhan, S., Surface, M., Merchant, K., Alcalay, R. N., Mann, M.
10.1101/2020.08.09.243584 — Posted: 2020-08-10 — Discussion: 2021-04-07  EMBO Press
Integrated intra- and intercellular signaling knowledge for multicelullar omics analysis
Turei, D., Valdeolivas, A., Gul, L., Palacio-Escat, N., Ivanova, O., Gabor, A., Modos, D., Korcsmaros, T., Saez-Rodriguez, J.
10.1101/2020.08.03.221242 — Posted: 2020-08-03 — Discussion: 2021-04-05  EMBO Press
From Chemoproteomic-Detected Amino Acids to Genomic Coordinates: Insights into Precise Multi-omic Data Integration
Palafox, M. F., Arboleda, V. A., Backus, K. M.
10.1101/2020.07.03.186007 — Posted: 2020-07-04 — Discussion: 2021-04-02  EMBO Press
Promoters adopt distinct dynamic manifestations depending on transcription factor context
Hansen, A. S., Zechner, C. S.
10.1101/650762 — Posted: 2019-05-26 — Discussion: 2021-04-02  EMBO Press
The circadian oscillator analysed at the single-transcript level
Phillips, N. E., Hugues, A., Yeung, J., Durandau, E., Nicolas, D., Naef, F.
10.1101/2020.08.26.268201 — Posted: 2020-08-27 — Discussion: 2021-04-02  EMBO Press
Oncogenic mutant RAS activity is rescaled by the ERK/MAPK pathway
Gillies, T. E., Pargett, M., Silva, J. M., Teragawa, C., McCormick, F., Albeck, J. G.
10.1101/2020.02.17.952093 — Posted: 2020-02-17 — Discussion: 2021-02-25  EMBO Press
Dormancy as a spectrum measuring spore’s proximity to death and to replicative life
Maire, T., Allertz, T., Betjes, M. A., Youk, H.
10.1101/747766 — Posted: 2019-08-28 — Discussion: 2021-02-25  EMBO Press
Aggregation and Disaggregation Features of the Human Proteome
Määttä, T. A., Rettel, M., Helm, D., Stein, F., Savitski, M. M.
10.1101/2020.02.05.931675 — Posted: 2020-02-05 — Discussion: 2021-02-25  EMBO Press
The transcriptome dynamics of single cells during the cell cycle
Schwabe, D., Formichetti, S., Junker, J. P., Falcke, M., Rajewsky, N.
10.1101/2019.12.23.887570 — Posted: 2019-12-26 — Discussion: 2021-02-25  EMBO Press

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