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KG-Microbe - Building Modular and Scalable Knowledge Graphs for Microbiome and Microbial Sciences
Santangelo, B. E., Caufield, J. H., Reese, J., Kliegr, T., Hunter, L. E., Lozupone, C. A., Hegde, H., Joachimiak, M. P.
10.1101/2025.02.24.639989 — Posted: 2025-02-28 — Discussion: 2026-08-07  GigaScience
Urbanisation and habitat fragmentation favour thermophilic and monogynous ant species
Finand, B., Monnin, T., Bocquet, C., Bultelle, A., Federici, P., Darmedru, L., Gouffault, S., Ledamoisel, J., Loeuille, N.
10.1101/2025.02.25.640022 — Posted: 2025-02-28 — Discussion: 2026-08-07  Peer Community In
Synthetic auxotrophy reveals metabolic regulation of plasma cell generation, affinity maturation, and cytokine receptor signaling
Cho, S. H., Brookens, S. K., Raybuck, A. L., Meyer, K., Paik, Y. C., Hamilton, J. A., Li, J., Kalecky, K., Park, C., Hicks, S. L., Karijolich, J., Bottiglieri, T., Rathmell, J., Mogilenko, D., Scharer, C. D., Boothby, M. R.
10.1101/2025.05.05.652119 — Posted: 2025-05-09 — Discussion: 2026-08-07  eLife
EXTENDING PROTEIN LANGUAGE MODELS TO A VIRAL GENOMIC SCALE USING BIOLOGICALLY INDUCED SPARSE ATTENTION
Dejean, T. L., Ferrell, B. D., Sawhney, R., Harrigan, W., Polson, S. W., Wommack, K. E., Belcaid, M.
10.1101/2025.05.29.656907 — Posted: 2025-06-01 — Discussion: 2026-08-07  GigaScience
A GCN1-independent activator of the kinase GCN2
Zhu, J., Emanuelli, G., Masson, G., Vinciauskaite, V., Willems, H., Lim, A., Brown, C. A., Winpenny, D., Clarke, M., Gilley, R., Preston, F., Wilson, J., Bader, A., Rahman, T., Chambers, J. E., Skidmore, J., Morrell, N., Marciniak, S. J.
10.1101/2025.06.29.662197 — Posted: 2025-07-03 — Discussion: 2026-08-07  eLife
Explainable machine learning-assisted exploration of chromatin dynamics reveals chromosome-specific response to serum starvation
Redchuk, T., Pennanen, A., Jaalinoja, H., Natri, O., Paavolainen, L., Vartiainen, M. K.
10.1101/2025.08.08.669316 — Posted: 2025-08-11 — Discussion: 2026-08-07  eLife
Bruce suppresses autophagy-regulated caspase activity and wing tissue growth in Drosophila
Shinoda, N., Hama, Y., Hanawa, N., Miura, M.
10.1101/2025.08.24.672027 — Posted: 2025-08-27 — Discussion: 2026-08-07  eLife
ChatMDV: Democratising Bioinformatics Analysis Using Large Language Models
Kiourlappou, M., Todd, P., Kong, Y., Hire, J., Nawab Mohammed, S. F., Sergeant, M., Zohren, S., Hughes, J., Taylor, S.
10.1101/2025.08.26.671083 — Posted: 2025-08-27 — Discussion: 2026-08-07  GigaScience
Reward-reset interval timing drives patch foraging decisions through neural state transitions in dorsomedial striatum
Sutlief, E., Zhang, S., Forsberg, K., Kaneko, R., Shuler, M. G. H.
10.1101/2025.09.29.679309 — Posted: 2025-10-01 — Discussion: 2026-08-07  eLife
NanoporeDB: A Structural Resource Of Multimeric Protein Nanopores In Single-Molecule Sensing
Liu, Y., Su, Z., Yang, W., Li, D., Zhang, J., Zhang, Y., Zeng, T., Zhang, Y., Li, Y., Fan, G., Ma, K., Liu, S., Xu, X., Dong, Y., Wang, Z.
10.1101/2025.11.25.690617 — Posted: 2025-11-28 — Discussion: 2026-08-07  GigaScience

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