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A Multi-omics Data Analysis Workflow Packaged as a FAIR Digital Object
Niehues, A., de Visser, C., Hagenbeek, F. A., Kulkarni, P., Pool, R., Karu, N., Kindt, A. S. D., Singh, G., Vermeiren, R. R. J. M., Boomsma, D. I., van Dongen, J., 't Hoen, P. A. C., van Gool, A. J.
10.1101/2023.06.07.543986 — Posted: 2023-06-09 — Discussion: 2024-02-11  GigaScience
Machine Learning Made Easy (MLme): A Comprehensive Toolkit for Machine Learning-Driven Data Analysis
Akshay, A., Katoch, M., Shekarchizadeh, N., Abedi, M., Sharma, A., C. Burkhard, F., M. Adam, R., Monastyrskaia, K., Hashemi Gheinani, A.
10.1101/2023.07.04.546825 — Posted: 2023-07-04 — Discussion: 2024-02-11  GigaScience
Morphogen-driven human iPSCs differentiation in 3D in vitro models of gastrulation is precluded by physical confinement.
Alsehli, H. S., Roy, E., Williams, T., Kuziola, A., Guo, Y., Green, J. B., Gentleman, E., Danovi, D.
10.1101/2023.03.29.534685 — Posted: 2023-03-29 — Discussion: 2024-02-10  Review Commons
Safb1 regulates cell fate determination in adult neural stem cells by enhancing Drosha cleavage of NFIB mRNA
Ifflander, N., Rolando, C., Balta, E.-A., Forcella, P., Mukhtar, T., Bock, T., Taylor, V.
10.1101/2021.10.22.465432 — Posted: 2021-10-23 — Discussion: 2024-02-09  eLife
Maturation of prefrontal input to dorsal raphe increases behavioral persistence in mice
Gutierrez-Castellanos, N., Sarra, D., Godinho, B., Mainen, Z.
10.1101/2022.01.01.474690 — Posted: 2022-01-02 — Discussion: 2024-02-09  eLife
Paternal obesity alters the sperm epigenome and is associated with changes in the placental transcriptome and cellular composition
Pepin, A.-S., Jazwiec, P. A., Dumeaux, V., Sloboda, D. M., Kimmins, S.
10.1101/2022.08.30.503982 — Posted: 2022-08-31 — Discussion: 2024-02-09  eLife
A common cis-regulatory variant impacts normal-range and disease-associated human facial shape through regulation of PKDCC during chondrogenesis
Mohammed, J., Arora, N., Matthews, H., Hansen, K., Bader, M., Shaffer, J. R., Weinberg, S. M., Swigut, T., Peter Claes, P., Selleri, L., Wysocka, J.
10.1101/2022.09.05.506587 — Posted: 2022-09-05 — Discussion: 2024-02-09  eLife
MetaPredict: A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes
Geller-McGrath, D., Konwar, K., Edgcomb, V. P., Pachiadaki, M., Roddy, J., Wheeler, T., McDermott, J. E.
10.1101/2022.12.21.521254 — Posted: 2022-12-22 — Discussion: 2024-02-09  eLife
Pig herd management and infection transmission dynamics: a challenge for modellers.
Sicard, V., Picault, S., Andraud, M.
10.1101/2023.05.17.541128 — Posted: 2023-05-20 — Discussion: 2024-02-09  Peer Community In
SPAG7 deletion causes intrauterine growth restriction, resulting in adulthood obesity and metabolic dysfunction
Flaherty, S. E., Bezy, O., Paulhus, B. L., Song, L., Piper, M., Pang, J., Park, Y., Asano, S., Lien, Y.-C., Griffin, J. D., Robertson, A., Opsahl, A., Shanthappa, D. H., Ahn, Y., Pashos, E., Simmons, R. G., Birnbaum, M. J., Wu, Z.
10.1101/2023.09.05.555087 — Posted: 2023-09-05 — Discussion: 2024-02-09  eLife

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