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Single Cell RNA Sequencing Provides Clues for the Developmental Genetic Basis of Syngnathidae's Evolutionary Adaptations

Healey, H. M., Penn, H. B., Small, C. M., Bassham, S., Goyal, V., Woods, M. A., Cresko, W. A.

10.1101/2024.04.08.588518 — Posted: 2024-04-09 — Discussion: 2024-11-25 eLife

Single-Cell and Spatial Transcriptomic Analyses Reveals the Dynamic Transcript Profiles of Myocardial Lymphangiogenesis post Myocardial Infarction

Jiaqi, H., Zhang, D., Song, H., Liu, Z., Liu, D., Zhang, X., Zhao, X., Zhang, Y., Liu, J., Xu, J., Yan, C., Han, Y.

10.1101/2024.06.10.598235 — Posted: 2024-06-11 — Discussion: 2024-11-25 eLife

Temporal dynamics analysis reveals that concurrent working memory load eliminates the Stroop effect through disrupting stimulus-response mapping

Li, Y., Lin, Y., Li, Q., Chen, Y., Li, Z., Chen, A.

10.1101/2024.07.17.603992 — Posted: 2024-07-19 — Discussion: 2024-11-25 eLife

Dopamine activity encodes the changing valence of the same stimulus in conditioned taste aversion paradigms

Loh, M., Hurh, S., Bazzino, P., Donka, R. M., Keinath, A. T., Roitman, J., Roitman, M. F.

10.1101/2024.09.30.615853 — Posted: 2024-10-01 — Discussion: 2024-11-25 eLife

StereoSiTE: A framework to spatially and quantitatively profile the cellular neighborhood organized iTME

Liu, X., Qu, C., Liu, C., Zhu, N., Huang, H., Teng, F., Huang, C., Luo, B., Liu, X., Xu, Y., Xie, M., Xi, F., Li, M., Wu, L., Li, Y., Chen, A., Xu, X., Liao, S., Zhang, J.

10.1101/2022.12.31.522366 — Posted: 2022-12-31 — Discussion: 2024-11-23 GigaScience

A data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence (MISIP)

Simpson, A. M. R., Wood Charlson, E. M., Smith, M., Beilsmith, K., Koch, B., Walls, R. L., Wilhelm, R. C.

10.1101/2023.07.13.548835 — Posted: 2023-07-17 — Discussion: 2024-11-23 GigaScience

An Unsupervised Contrastive Learning Model for Data Integration of Spatially Resolved Transcriptomics

Zhang, C., Liu, L., Zhang, Y., Li, M., Fang, S., Kang, Q., Chen, A., Xu, X., Zhang, Y., Li, Y.

10.1101/2023.08.08.552402 — Posted: 2023-08-12 — Discussion: 2024-11-23 GigaScience

CoCoPyE: feature engineering for learning and prediction of genome quality indices

Birth, N., Leppich, N., Schirmacher, J., Andreae, N., Steinkamp, R., Blanke, M., Meinicke, P.

10.1101/2024.02.07.579156 — Posted: 2024-02-10 — Discussion: 2024-11-23 GigaScience

Discovering genotype-phenotype relationships with machine learning and the Visual Physiology Opsin Database (VPOD)

Frazer, S. A., Baghbanzadeh, M., Rahnavard, A., Crandall, K. A., Oakley, T. H.

10.1101/2024.02.12.579993 — Posted: 2024-02-14 — Discussion: 2024-11-23 GigaScience

Modeling and Simulation of Rat Non-Barrel Somatosensory Cortex. Part I: Modeling Anatomy

Reimann, M. W., Bolanos Puchet, S., Egas Santander, D., Courcol, J.-D., Arnaudon, A., Coste, B., Delemontex, T., Devresse, A., Dictus, H., Dietz, A., Ecker, A., Favreau, C., Ficarelli, G., Gevaert, M., Hernando, J. B., Herttuainen, J., Isbister, J. B., Kanari, L., Keller, D., King, J. G., Kumbhar, P., Lapere, S., Lazovskis, J., Lu, H., Ninin, N., Pereira, F., Planas, J., Pokorny, C., Riquelme, J. L., Romani, A., Shi, Y., Smith, J. P., Sood, V., Srivastava, M., Van Geit, W., Vanherpe, L., Wolf, M., Levi, R., Hess, K., Schürmann, F., Muller, E. B., Ramaswamy, S., Markram, H.

10.1101/2022.08.11.503144 — Posted: 2022-08-15 — Discussion: 2024-11-22 eLife