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101 Reviews — EMBO Press — Systems Biology

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Dynamic human liver proteome atlas reveals functional insights into disease pathways
Mann, M., Niu, L., Geyer, P., Gupta, R., Santos, A., Meier, F., Doll, S., Wewer Albrechtsen, N. J., Klein, S., Ortiz, C., Uschner, F. E., Schierwagen, R., Trebicka, J.
10.1101/2022.01.28.478194 — Posted: 2022-01-31 — Discussion: 2022-11-21  EMBO Press
Reproducibility in systems biology modelling
Tiwari, K., Kananathan, S., Roberts, M. G., Meyer, J. P., Sharif Shohan, M. U., Xavier, A., Maire, M., Zyoud, A., Men, J., Ng, S., Nguyen, T. V. N., Glont, M., Hermjakob, H., Malik Sheriff, R. S.
10.1101/2020.08.07.239855 — Posted: 2020-08-10 — Discussion: 2022-11-21  EMBO Press
Physical and functional interactome atlas of human receptor tyrosine kinases
Salokas, K., Öhman, T., Liu, X., Chowdhury, I., Gawriyski, L., keskitalo, s., Varjosalo, M.
10.1101/2021.09.17.460748 — Posted: 2021-09-20 — Discussion: 2022-04-22  EMBO Press
Conserved exchange of paralog proteins during neuronal differentiation
Di Fraia, D., Anitei, M., Mackmull, M.-T., Parca, L., Behrendt, L., Andres-Pons, A., Gilmour, D., Helmer-Citterich, M., Kaether, C., Beck, M., Ori, A.
10.1101/2021.07.22.453347 — Posted: 2021-07-23 — Discussion: 2022-04-08  EMBO Press
Growth-Rate Dependent And Nutrient-Specific Gene Expression Resource Allocation In Fission Yeast
Kleijn, I. T., Martinez-Segura, A., Bertaux, F., Saint, M., Kramer, H., Shahrezaei, V., Marguerat, S.
10.1101/2021.03.16.435638 — Posted: 2021-03-17 — Discussion: 2022-03-22  EMBO Press
A human kinase yeast array for the identification of kinases modulating phosphorylation-dependent protein-protein interactions
Jehle, S., Kunowska, N., Benlasfer, N., Woodsmith, J., Weber, G., Wahl, M. c., Stelzl, U.
10.1101/2021.11.18.469002 — Posted: 2021-11-19 — Discussion: 2022-03-22  EMBO Press
Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation
Brunner, A.-D., Thielert, M., Vasilopoulou, C., Ammar, C., Coscia, F., Mund, A., Horning, O. B., Bache, N., Apalategui, A., Lubeck, M., Raether, O., Park, M., Richter, S., Fischer, D. S., Theis, F. J., Meier, F., Mann, M.
10.1101/2020.12.22.423933 — Posted: 2020-12-22 — Discussion: 2022-03-22  EMBO Press
Major functional bias for mitochondrial complexes in genome-wide CRISPR screens
Rahman, M., Billmann, M., Costanzo, M., Aregger, M., Tong, A. H. Y., Chan, K., Ward, H. N., Brown, K. R., Andrews, B. J., Boone, C., Moffat, J., Myers, C. L.
10.1101/2020.08.31.273730 — Posted: 2020-08-31 — Discussion: 2022-02-19  EMBO Press
Trade-offs in adaptation to glycolysis and gluconeogenesis result in a preferential flux direction in central metabolism
Schink, S. J., Christodoulou, D., Mukherjee, A., Athaide, E., Sauer, U., Basan, M.
10.1101/2021.05.07.443112 — Posted: 2021-05-08 — Discussion: 2022-01-21  EMBO Press
A Genome-Scale TF-DNA Interaction Network of Transcriptional Regulation of Arabidopsis Primary and Specialized Metabolism
Tang, M., Li, B., Zhou, X., Bolt, T., Li, J. J., Cruz, N., Gaudinier, A., Ngo, R., Clark-Wiest, C., Kliebenstein, D., Brady, S.
10.1101/2021.05.13.443927 — Posted: 2021-05-14 — Discussion: 2021-12-16  EMBO Press

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