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110 Reviews — eLife — Systems Biology

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Designing biochemical circuits with tree search
Bhamidipati, P. S., Thomson, M.
10.1101/2025.01.27.635147 — Posted: 2025-01-29 — Discussion: 2025-06-20  eLife
A mathematical model for ketosis-prone diabetes suggests the existence of multiple pancreatic β-cell inactivation mechanisms
Ridout, S. A., Vellanki, P., Nemenman, I.
10.1101/2024.06.04.597343 — Posted: 2024-06-06 — Discussion: 2025-06-16  eLife
Perturbation-response analysis of in silico metabolic dynamics: Hard-coded responsiveness in the cofactor and network sparsity
Himeoka, Y., Furusawa, C.
10.1101/2023.10.18.562862 — Posted: 2023-10-20 — Discussion: 2025-04-01  eLife
Revealing global stoichiometry conservation architecture in cells from Raman spectral patterns
Kamei, K.-i. F., Kobayashi-Kirschvink, K. J., Nozoe, T., Nakaoka, H., Umetani, M., Wakamoto, Y.
10.1101/2023.05.09.539921 — Posted: 2024-03-06 — Discussion: 2025-03-24  eLife
Passive shaping of intra- and intercellular m6A dynamics via mRNA metabolism
Dierks, D., Nir, R., Shachar, R., Uzonyi, A., Garcia-Campos, M. A., Rossmanith, W., Hanna, J. H., Slobodin, B., Antebi, Y., Scherz-Shouval, R., Schwartz, S.
10.1101/2024.05.09.593376 — Posted: 2024-05-14 — Discussion: 2025-03-13  eLife
Fine-tuning of RecBCD expression by post-transcriptional regulation is required for optimal DNA repair in Escherichia coli
Kalita, I., Iosub, I. A., Granneman, S., El Karoui, M.
10.1101/2021.10.23.465540 — Posted: 2021-10-24 — Discussion: 2025-03-12  eLife
Transplantation of exogenous mitochondria mitigates myocardial dysfunction after cardiac arrest
Wang, Z., Zhu, J., Xu, M., Ma, X., Shen, M., Yan, J., Gan, G., Zhou, X.
10.1101/2024.04.29.591638 — Posted: 2024-05-01 — Discussion: 2025-02-20  eLife
System genomics of salinity stress response in rice
Gupta, S., Niels Groen, S., Zaidem, M. L., Sajise, A. G. C., Calic, I., Natividad, M., McNally, K., Vergara, G. V., Satija, R., Franks, S. J., Singh, R. K., Joly-Lopez, Z., Purugganan, M. D.
10.1101/2024.05.31.596807 — Posted: 2024-06-06 — Discussion: 2025-02-06  eLife
A statistical framework for quantifying the nuclear export rate of influenza viral mRNAs.
Miura, M., Kiuchi, N., Lau, S.-Y., Mok, B. W.-Y., Ushirogawa, H., Naito, T., Chen, H., Saito, M.
10.1101/2023.04.07.536075 — Posted: 2023-04-08 — Discussion: 2025-02-04  eLife
Emergence of alternative stable states in gene exchange communities
Hong, J., Xue, W., Wang, T.
10.1101/2024.06.18.599596 — Posted: 2024-06-22 — Discussion: 2025-02-04  eLife

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