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117 Reviews — eLife — Systems Biology

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Revealing global stoichiometry conservation architecture in cells from Raman spectral patterns
Kamei, K.-i. F., Kobayashi-Kirschvink, K. J., Nozoe, T., Nakaoka, H., Umetani, M., Wakamoto, Y.
10.1101/2023.05.09.539921 — Posted: 2024-03-06 — Discussion: 2025-11-26  eLife
Learning sequence-function relationships with scalable, interpretable Gaussian processes
Zhou, J., Marti-Gomez, C., Petti, S., McCandlish, D. M.
10.1101/2025.08.15.670613 — Posted: 2025-08-19 — Discussion: 2025-11-24  eLife
Combinatorial transcriptional codes specify macrophage polarization destinations
Chandra, N., Ravichandran, S., Bhatt, B., Balaji, K. N.
10.1101/2021.10.19.464946 — Posted: 2021-10-19 — Discussion: 2025-11-21  eLife
TrueProbes: Quantitative Single-Molecule RNA-FISH Probe Design Improves RNA Detection
Hughes, J. J., Kesler, B. K., Adams, J. E., Hospelhorn, B. G., Neuert, G.
10.1101/2025.08.14.670355 — Posted: 2025-08-19 — Discussion: 2025-10-09  eLife
Tunable ligand discrimination via kinetic sorting
Dixit, P. D., Goetz, A., Madsen, R. R.
10.1101/2024.10.01.615884 — Posted: 2024-10-02 — Discussion: 2025-10-03  eLife
Regulation of Transcriptional Bursting and Spatial Patterning in Early Drosophila Embryo Development
Nieto, C., Vahdat, Z., Lim, B., Singh, A.
10.1101/2025.05.02.651973 — Posted: 2025-05-08 — Discussion: 2025-09-23  eLife
Cell type-specific network analysis in Diversity Outbred mice identifies genes potentially responsible for human bone mineral density GWAS associations
Dillard, L. J., Calabrese, G. M., Mesner, L. D., Farber, C. R.
10.1101/2024.05.20.594981 — Posted: 2024-05-21 — Discussion: 2025-09-02  eLife
Exploiting fluctuations in gene expression to detect causal interactions between genes
Joly-Smith, E., Talpur, M. M., Allard, P., Papazotos, F., Potvin-Trottier, L., Hilfinger, A.
10.1101/2023.09.01.555799 — Posted: 2023-09-04 — Discussion: 2025-08-13  eLife
The zoo of the gene networks capable of pattern formation by extracellular signaling
Anhon, K. M., Ciudad, I. S.
10.1101/2025.05.06.652477 — Posted: 2025-05-07 — Discussion: 2025-08-06  eLife
Ribosome demand links transcriptional bursts to protein expression noise
Pal, S., Ray, U., Dhar, R.
10.1101/2023.10.19.563206 — Posted: 2023-10-23 — Discussion: 2025-07-11  eLife

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