bioRxiv/medRxiv TRiP Review Activity

101 Reviews — EMBO Press — Systems Biology

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Automated assembly of molecular mechanisms at scale from text mining and curated databases
Bachman, J. A., Gyori, B. M., Sorger, P. K.
10.1101/2022.08.30.505688 — Posted: 2022-08-31 — Discussion: 2023-05-24  EMBO Press
Combined measurements of proteome and cell turnover reveal the influences of tissue context and pathological aging on protein and organelle lifetimes
Hasper, J., Welle, K. A., Hryhorenko, J., Ghaemmaghami, S., Buchwalter, A.
10.1101/2022.04.24.488979 — Posted: 2022-04-24 — Discussion: 2023-04-20  EMBO Press
Analysis of context-specific KRAS-effectors (sub)complexes in Caco-2 cells
Kiel, C., Ternet, C., Catozzi, S., Junk, P., Oliviero, G., Sevrin, T., Wynne, K.
10.1101/2022.08.15.503960 — Posted: 2022-08-15 — Discussion: 2023-04-11  EMBO Press
Mechanistic model of MAPK signaling reveals how allostery and rewiring contribute to drug resistance
Froehlich, F., Gerosa, L., Muhlich, J. L., Sorger, P. K.
10.1101/2022.02.17.480899 — Posted: 2022-02-18 — Discussion: 2023-02-17  EMBO Press
Constricted migration contributes to persistent 3D genome structure changes associated with an invasive phenotype in melanoma cells
Golloshi, R., San Martin, R., Das, P., Raines, T. I., Thurston, D. M., Freeman, T. F., McCord, R. P.
10.1101/856583 — Posted: 2019-11-26 — Discussion: 2023-02-14  EMBO Press
Adaptation of bacterial proteome reveals a key role of the cell envelope in starvation survival
Schink, S. J., Ammar, C., Chang, Y.-F., Zimmer, R., Basan, M.
10.1101/2022.05.18.492425 — Posted: 2022-05-18 — Discussion: 2023-01-24  EMBO Press
Epithelial-mesenchymal transition is the main driver of intrinsic metabolism in cancer cell lines
Cherkaoui, S., Durot, S., Bradley, J., Critchlow, S., Dubuis, S., Masiero, M. M., Wegmann, R., Snijder, B., Othman, A., Bendtsen, C., Zamboni, N.
10.1101/2021.11.02.466992 — Posted: 2021-11-04 — Discussion: 2022-12-01  EMBO Press
Dynamic human liver proteome atlas reveals functional insights into disease pathways
Mann, M., Niu, L., Geyer, P., Gupta, R., Santos, A., Meier, F., Doll, S., Wewer Albrechtsen, N. J., Klein, S., Ortiz, C., Uschner, F. E., Schierwagen, R., Trebicka, J.
10.1101/2022.01.28.478194 — Posted: 2022-01-31 — Discussion: 2022-11-21  EMBO Press
Reproducibility in systems biology modelling
Tiwari, K., Kananathan, S., Roberts, M. G., Meyer, J. P., Sharif Shohan, M. U., Xavier, A., Maire, M., Zyoud, A., Men, J., Ng, S., Nguyen, T. V. N., Glont, M., Hermjakob, H., Malik Sheriff, R. S.
10.1101/2020.08.07.239855 — Posted: 2020-08-10 — Discussion: 2022-11-21  EMBO Press
Species richness determines C. difficile invasion outcome in synthetic human gut communities
Hromada, S., Clark, R. L., Qian, Y., Watson, L., Safdar, N., Venturelli, O. S.
10.1101/2021.03.23.436677 — Posted: 2021-03-23 — Discussion: 2022-11-21  EMBO Press

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