bioRxiv/medRxiv TRiP Review Activity

251 Reviews — All Partners — Systems Biology

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Single-mRNA imaging and modeling reveal coupled translation initiation and elongation rates
Lamberti, I., Chao, J., Gobet, C., Naef, F.
10.1101/2025.04.30.651446 — Posted: 2025-05-05 — Discussion: 2025-08-01  eLife
Ribosome demand links transcriptional bursts to protein expression noise
Pal, S., Ray, U., Dhar, R.
10.1101/2023.10.19.563206 — Posted: 2023-10-23 — Discussion: 2025-07-11  eLife
The Product neutrality function defining genetic interactions emerges from mechanistic models of cell growth
Fuentes Valenzuela, L., Francois, P., Skotheim, J. M.
10.1101/2024.11.29.626097 — Posted: 2024-12-04 — Discussion: 2025-07-04  eLife
Designing biochemical circuits with tree search
Bhamidipati, P. S., Thomson, M.
10.1101/2025.01.27.635147 — Posted: 2025-01-29 — Discussion: 2025-06-20  eLife
A mathematical model for ketosis-prone diabetes suggests the existence of multiple pancreatic β-cell inactivation mechanisms
Ridout, S. A., Vellanki, P., Nemenman, I.
10.1101/2024.06.04.597343 — Posted: 2024-06-06 — Discussion: 2025-06-16  eLife
Dynamic sensitivity analysis of a mathematical model describing the effect of the macroalgae *Asparagopsis taxiformis* on rumen fermentation and methane production under *in vitro* continuous conditions
Blondiaux, P., Kiesse, T. S., Eugene, M., Munoz-Tamayo, R.
10.1101/2024.06.19.599712 — Posted: 2024-06-23 — Discussion: 2025-06-10  Peer Community In
Perturbation-response analysis of in silico metabolic dynamics: Hard-coded responsiveness in the cofactor and network sparsity
Himeoka, Y., Furusawa, C.
10.1101/2023.10.18.562862 — Posted: 2023-10-20 — Discussion: 2025-04-01  eLife
Revealing global stoichiometry conservation architecture in cells from Raman spectral patterns
Kamei, K.-i. F., Kobayashi-Kirschvink, K. J., Nozoe, T., Nakaoka, H., Umetani, M., Wakamoto, Y.
10.1101/2023.05.09.539921 — Posted: 2024-03-06 — Discussion: 2025-03-24  eLife
Passive shaping of intra- and intercellular m6A dynamics via mRNA metabolism
Dierks, D., Nir, R., Shachar, R., Uzonyi, A., Garcia-Campos, M. A., Rossmanith, W., Hanna, J. H., Slobodin, B., Antebi, Y., Scherz-Shouval, R., Schwartz, S.
10.1101/2024.05.09.593376 — Posted: 2024-05-14 — Discussion: 2025-03-13  eLife
Fine-tuning of RecBCD expression by post-transcriptional regulation is required for optimal DNA repair in Escherichia coli
Kalita, I., Iosub, I. A., Granneman, S., El Karoui, M.
10.1101/2021.10.23.465540 — Posted: 2021-10-24 — Discussion: 2025-03-12  eLife

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