bioRxiv/medRxiv TRiP Review Activity

260 Reviews — All Partners — Systems Biology

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Combinatorial transcriptional codes specify macrophage polarization destinations
Chandra, N., Ravichandran, S., Bhatt, B., Balaji, K. N.
10.1101/2021.10.19.464946 — Posted: 2021-10-19 — Discussion: 2025-11-21  eLife
Ubiquitous systems drift in the evolution of development
van der Jagt, P. L., Oud, S., Vroomans, R. M. A.
10.1101/2025.04.23.650280 — Posted: 2025-04-23 — Discussion: 2025-10-30  Review Commons
Unveiling Gene Perturbation Effects through Gene Regulatory Networks Inference from single-cell transcriptomic data
Corridori, C., Romeike, M., Nicoletti, G., Buecker, C., Suweis, S., Azaele, S., Martello, G.
10.1101/2024.05.10.593314 — Posted: 2024-05-10 — Discussion: 2025-10-21  Review Commons
TrueProbes: Quantitative Single-Molecule RNA-FISH Probe Design Improves RNA Detection
Hughes, J. J., Kesler, B. K., Adams, J. E., Hospelhorn, B. G., Neuert, G.
10.1101/2025.08.14.670355 — Posted: 2025-08-19 — Discussion: 2025-10-09  eLife
Tunable ligand discrimination via kinetic sorting
Dixit, P. D., Goetz, A., Madsen, R. R.
10.1101/2024.10.01.615884 — Posted: 2024-10-02 — Discussion: 2025-10-03  eLife
Genome-scale prediction of gene ontology from mass fingerprints reveals new metabolic gene functions
Vavricka, C., Mochizuki, M., Yuzawa, S., Murata, M., Yoshida, T., Watanabe, N., Nakatsui, M., Ishii, J., Hara, K., Alper, H. S., Hasunuma, T., Kondo, A., Araki, M.
10.1101/2024.11.27.625594 — Posted: 2024-12-02 — Discussion: 2025-10-01  EMBO Press
Regulation of Transcriptional Bursting and Spatial Patterning in Early Drosophila Embryo Development
Nieto, C., Vahdat, Z., Lim, B., Singh, A.
10.1101/2025.05.02.651973 — Posted: 2025-05-08 — Discussion: 2025-09-23  eLife
Multi-omics analysis of endothelial cells reveals the metabolic diversity that underlies endothelial cell functions
Durot, S., Doubleday, P. F., Schulla, L., Sabine, A., Petrova, T. V., Zamboni, N.
10.1101/2025.03.03.641143 — Posted: 2025-03-05 — Discussion: 2025-09-15  Review Commons
Cell type-specific network analysis in Diversity Outbred mice identifies genes potentially responsible for human bone mineral density GWAS associations
Dillard, L. J., Calabrese, G. M., Mesner, L. D., Farber, C. R.
10.1101/2024.05.20.594981 — Posted: 2024-05-21 — Discussion: 2025-09-02  eLife
Exploiting fluctuations in gene expression to detect causal interactions between genes
Joly-Smith, E., Talpur, M. M., Allard, P., Papazotos, F., Potvin-Trottier, L., Hilfinger, A.
10.1101/2023.09.01.555799 — Posted: 2023-09-04 — Discussion: 2025-08-13  eLife

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