bioRxiv/medRxiv TRiP Review Activity

259 Reviews — All Partners — Systems Biology

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Identification of Covalent Modifications Regulating Immune Signaling Complex Composition and Phenotype
Frauenstein, A., Ebner, S., Sinha, A., Kshiti, P., Swatek, K., Hornburg, D., Mann, M., Meissner, F.
10.1101/2020.11.16.384750 — Posted: 2020-11-17 — Discussion: 2021-08-13  EMBO Press
TNF stimulation primarily modulates transcriptional burst size of NF-κB-regulated genes
Bass, V. L., Wong, V. C., Bullock, M. E., Gaudet, S., Miller-Jensen, K.
10.1101/2020.11.16.384297 — Posted: 2020-11-17 — Discussion: 2021-08-13  EMBO Press
Single-cell transcriptomics reveals immune response of intestinal cell types to viral infection
Triana, S., Stanifer, M. L., Shahraz, M., Mukenhirn, M., Kee, C., Ordonez Rueda, D., Paulsen, M., Benes, V., Boulant, S., Alexandrov, T.
10.1101/2020.08.19.255893 — Posted: 2020-08-19 — Discussion: 2021-08-13  EMBO Press
Behavioral fingerprints predict insecticide and anthelmintic mode of action
McDermott-Rouse, A., Minga, E., Barlow, I., Feriani, L., Harlow, P. H., Flemming, A. J., Brown, A.
10.1101/2021.01.27.428391 — Posted: 2021-01-28 — Discussion: 2021-07-17  EMBO Press
JSTA: joint cell segmentation and cell type annotation for spatial transcriptomics
Littman, R., Hemminger, Z., Foreman, R., Arneson, D., Zhang, G., Gomez-Pinilla, F., Yang, X., Wollman, R.
10.1101/2020.09.18.304147 — Posted: 2020-09-20 — Discussion: 2021-07-17  EMBO Press
Two different cell-cycle processes determine the timing of cell division in Escherichia coli
Colin, A., Micali, G., Faure, L., Cosentino Lagomarsino, M., van Teeffelen, S.
10.1101/2021.03.08.434443 — Posted: 2021-03-09 — Discussion: 2021-07-06  eLife
Dynamically Linking Influenza Virus Infection with Lung Injury to Predict Disease Severity
Myers, M. A., Smith, A. P., Lane, L. C., Moquin, D. J., Vogel, P., Woolard, S., Smith, A. M.
10.1101/555276 — Posted: 2019-12-05 — Discussion: 2021-06-18  eLife
Unsupervised machine learning reveals key immune cell subsets in COVID-19, rhinovirus infection, and cancer therapy
Barone, S. M., Paul, A. G. A., Muehling, L. M., Lannigan, J. A., Kwok, W. W., Turner, R. B., Woodfolk, J. A., Irish, J. M.
10.1101/2020.07.31.190454 — Posted: 2020-08-01 — Discussion: 2021-05-26  eLife
hu.MAP 2.0: Integration of over 15,000 proteomic experiments builds a global compendium of human multiprotein assemblies
Drew, K., Wallingford, J. B., Marcotte, E. M.
10.1101/2020.09.15.298216 — Posted: 2020-09-16 — Discussion: 2021-05-19  EMBO Press
Identification of phenotype-specific networks from paired gene expression-cell shape imaging data
Barker, C. G., Petsalaki, E., Giudice, G., Ekpenyong, E. N., Bakal, C., Petsalaki, E.
10.1101/2021.02.11.430597 — Posted: 2021-02-12 — Discussion: 2021-05-10  Review Commons

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